» Articles » PMID: 26289730

Beyond the Frozen Accident: Glycine Assignment in the Genetic Code

Overview
Journal J Mol Evol
Specialty Biochemistry
Date 2015 Aug 21
PMID 26289730
Citations 7
Authors
Affiliations
Soon will be listed here.
Abstract

tRNA with a terminal UCCA-3' forms a structure in which the 3'-sequence folds back. The adenine of glycyl-AMP can base-pair with the uridine of the UCCA-3' region, which places the glycine residue in close proximity to the 3'-terminal adenosine of tRNA, possibly enabling the transfer of glycine from glycyl-AMP to tRNA. Thus, the UCCA-3'-containing tRNA (as seen in eubacterial tRNA(Gly)s) would possess an intrinsic property of glycylation by glycyl-AMP. This model provides a new perspective on the origins of the glycine assignment in the genetic code, beyond the "frozen accident" hypothesis.

Citing Articles

On the Evolutionary History of the Twenty Encoded Amino Acids.

Kirschning A Chemistry. 2022; 28(55):e202201419.

PMID: 35726786 PMC: 9796705. DOI: 10.1002/chem.202201419.


Origin of the Genetic Code Is Found at the Transition between a Thioester World of Peptides and the Phosphoester World of Polynucleotides.

Hartman H, Smith T Life (Basel). 2019; 9(3).

PMID: 31443422 PMC: 6789786. DOI: 10.3390/life9030069.


Reciprocal Nucleopeptides as the Ancestral Darwinian Self-Replicator.

Banwell E, Piette B, Taormina A, Heddle J Mol Biol Evol. 2017; 35(2):404-416.

PMID: 29126321 PMC: 5850689. DOI: 10.1093/molbev/msx292.


Binding Properties of Split tRNA to the C-terminal Domain of Methionyl-tRNA Synthetase of Nanoarchaeum equitans.

Suzuki H, Kaneko A, Yamamoto T, Nambo M, Hirasawa I, Umehara T J Mol Evol. 2017; 84(5-6):267-278.

PMID: 28589220 DOI: 10.1007/s00239-017-9796-6.


On the Uniqueness of the Standard Genetic Code.

Zamudio G, Jose M Life (Basel). 2017; 7(1).

PMID: 28208827 PMC: 5370407. DOI: 10.3390/life7010007.


References
1.
Nameki N, Tamura K, Asahara H, Hasegawa T . Recognition of tRNA(Gly) by three widely diverged glycyl-tRNA synthetases. J Mol Biol. 1997; 268(3):640-7. DOI: 10.1006/jmbi.1997.0993. View

2.
Limmer S, Hofmann H, Ott G, Sprinzl M . The 3'-terminal end (NCCA) of tRNA determines the structure and stability of the aminoacyl acceptor stem. Proc Natl Acad Sci U S A. 1993; 90(13):6199-202. PMC: 46895. DOI: 10.1073/pnas.90.13.6199. View

3.
Kvenvolden K, Lawless J, Pering K, Peterson E, Flores J, Ponnamperuma C . Evidence for extraterrestrial amino-acids and hydrocarbons in the Murchison meteorite. Nature. 1970; 228(5275):923-6. DOI: 10.1038/228923a0. View

4.
Eigen M, Schuster P . The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle. Naturwissenschaften. 1977; 64(11):541-65. DOI: 10.1007/BF00450633. View

5.
Calderone C, Liu D . Nucleic-acid-templated synthesis as a model system for ancient translation. Curr Opin Chem Biol. 2004; 8(6):645-53. DOI: 10.1016/j.cbpa.2004.09.003. View