» Articles » PMID: 25977428

Complete Genome Sequences of Caldicellulosiruptor Sp. Strain Rt8.B8, Caldicellulosiruptor Sp. Strain Wai35.B1, and "Thermoanaerobacter Cellulolyticus"

Abstract

The genus Caldicellulosiruptor contains extremely thermophilic, cellulolytic bacteria capable of lignocellulose deconstruction. Currently, complete genome sequences for eleven Caldicellulosiruptor species are available. Here, we report genome sequences for three additional Caldicellulosiruptor species: Rt8.B8 DSM 8990 (New Zealand), Wai35.B1 DSM 8977 (New Zealand), and "Thermoanaerobacter cellulolyticus" strain NA10 DSM 8991 (Japan).

Citing Articles

Complete genome sequence for the extremely thermophilic bacterium (DSM:8977).

Manesh M, Bing R, Willard D, Adams M, Kelly R Microbiol Resour Announc. 2024; 13(2):e0122923.

PMID: 38265218 PMC: 10868218. DOI: 10.1128/mra.01229-23.


Whither the genus and the order Thermoanaerobacterales: phylogeny, taxonomy, ecology, and phenotype.

Bing R, Willard D, Crosby J, Adams M, Kelly R Front Microbiol. 2023; 14:1212538.

PMID: 37601363 PMC: 10434631. DOI: 10.3389/fmicb.2023.1212538.


Complete Genome Sequences of Caldicellulosiruptor acetigenus DSM 7040, Caldicellulosiruptor morganii DSM 8990 (RT8.B8), and Caldicellulosiruptor naganoensis DSM 8991 (NA10).

Bing R, Willard D, Manesh M, Laemthong T, Crosby J, Adams M Microbiol Resour Announc. 2023; 12(3):e0129222.

PMID: 36722965 PMC: 10019236. DOI: 10.1128/mra.01292-22.


Nitrogen-fixing Ability and Nitrogen Fixation-related Genes of Thermophilic Fermentative Bacteria in the Genus Caldicellulosiruptor.

Chen Y, Nishihara A, Haruta S Microbes Environ. 2021; 36(2).

PMID: 34108360 PMC: 8209448. DOI: 10.1264/jsme2.ME21018.


Genomic and physiological analyses reveal that extremely thermophilic Caldicellulosiruptor changbaiensis deploys uncommon cellulose attachment mechanisms.

Khan A, Mendoza C, Hauk V, Blumer-Schuette S J Ind Microbiol Biotechnol. 2019; 46(9-10):1251-1263.

PMID: 31392469 DOI: 10.1007/s10295-019-02222-1.


References
1.
Pati A, Ivanova N, Mikhailova N, Ovchinnikova G, Hooper S, Lykidis A . GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods. 2010; 7(6):455-7. DOI: 10.1038/nmeth.1457. View

2.
Chin C, Alexander D, Marks P, Klammer A, Drake J, Heiner C . Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods. 2013; 10(6):563-9. DOI: 10.1038/nmeth.2474. View

3.
Lowe T, Eddy S . tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64. PMC: 146525. DOI: 10.1093/nar/25.5.955. View

4.
van de Werken H, Verhaart M, VanFossen A, Willquist K, Lewis D, Nichols J . Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus. Appl Environ Microbiol. 2008; 74(21):6720-9. PMC: 2576683. DOI: 10.1128/AEM.00968-08. View

5.
Blumer-Schuette S, Ozdemir I, Mistry D, Lucas S, Lapidus A, Cheng J . Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and.... J Bacteriol. 2011; 193(6):1483-4. PMC: 3067630. DOI: 10.1128/JB.01515-10. View