Valusenko-Mehrkens R, Johne R, Falkenhagen A
Appl Microbiol Biotechnol. 2025; 109(1):52.
PMID: 40014110
PMC: 11868164.
DOI: 10.1007/s00253-025-13435-z.
Micallef P, Santamaria M, Escobar M, Andersson D, Osterlund T, Mouhanna P
Genome Biol. 2025; 26(1):37.
PMID: 40001095
PMC: 11853513.
DOI: 10.1186/s13059-025-03504-x.
Gang M, Othus M, Walter R
Cells. 2025; 14(4).
PMID: 39996762
PMC: 11853423.
DOI: 10.3390/cells14040290.
Nichols R, Davenport E
mSystems. 2024; 10(1):e0148024.
PMID: 39679684
PMC: 11748558.
DOI: 10.1128/msystems.01480-24.
Mostefai F, Grenier J, Poujol R, Hussin J
NAR Genom Bioinform. 2024; 6(4):lqae145.
PMID: 39534500
PMC: 11555433.
DOI: 10.1093/nargab/lqae145.
High accuracy meets high throughput for near full-length 16S ribosomal RNA amplicon sequencing on the Nanopore platform.
Lin X, Waring K, Ghezzi H, Tropini C, Tyson J, Ziels R
PNAS Nexus. 2024; 3(10):pgae411.
PMID: 39386005
PMC: 11462149.
DOI: 10.1093/pnasnexus/pgae411.
A Comparison of Sanger Sequencing and Amplicon-Based Next Generation Sequencing Approaches for the Detection of HIV-1 Drug Resistance Mutations.
Biba C, Fiaschi L, Varasi I, Paletti C, Bartolini N, Zazzi M
Viruses. 2024; 16(9).
PMID: 39339940
PMC: 11437444.
DOI: 10.3390/v16091465.
Monitoring of Pseudomonas aeruginosa mutational resistome dynamics using an enrichment panel for direct sequencing of clinical samples.
Cortes-Lara S, Medina-Reatiga P, Barrio-Tofino E, Gomis-Font M, Cabot G, Gomez-Romano F
EBioMedicine. 2024; 108:105367.
PMID: 39332391
PMC: 11467565.
DOI: 10.1016/j.ebiom.2024.105367.
Exploring the impact of sequence context on errors in SNP genotype calling with whole genome sequencing data using AI-based autoencoder approach.
Kotlarz K, Mielczarek M, Biecek P, Guldbrandtsen B, Szyda J
NAR Genom Bioinform. 2024; 6(3):lqae131.
PMID: 39318508
PMC: 11420682.
DOI: 10.1093/nargab/lqae131.
Whole genome sequencing study of identical twins discordant for psychosis.
Ormond C, Ryan N, Hedman A, Cannon T, Sullivan P, Gill M
Transl Psychiatry. 2024; 14(1):313.
PMID: 39080272
PMC: 11289105.
DOI: 10.1038/s41398-024-02982-0.
The COMPASS complex maintains the metastatic capacity imparted by a subpopulation of cells in UPS.
Ban G, Puviindran V, Xiang Y, Nadesan P, Tang J, Ou J
iScience. 2024; 27(7):110187.
PMID: 38989451
PMC: 11233968.
DOI: 10.1016/j.isci.2024.110187.
Accurate Recapitulation of Chikungunya Virus Complete Coding Sequence Phylogeny Using Variable Genome Regions for Genomic Surveillance.
Rodriguez-Aguilar E, Gutierrez-Millan E, Rodriguez M
Viruses. 2024; 16(6).
PMID: 38932218
PMC: 11209212.
DOI: 10.3390/v16060926.
"Outlaw" mutations in quasispecies of SARS-CoV-2 inhibit replication.
Colson P, Fantini J, Delerce J, Bader W, Levasseur A, Pontarotti P
Emerg Microbes Infect. 2024; 13(1):2368211.
PMID: 38916498
PMC: 11207925.
DOI: 10.1080/22221751.2024.2368211.
Single-cell genomics-based immune and disease monitoring in blood malignancies.
Rathgeber A, Ludwig L, Penter L
Clin Hematol Int. 2024; 6(2):62-84.
PMID: 38884110
PMC: 11180218.
DOI: 10.46989/001c.117961.
CD59 gene: 143 haplotypes of 22,718 nucleotides length by computational phasing in 113 individuals from different ethnicities.
Srivastava K, Yin Q, Makuria A, Rios M, Gebremedhin A, Flegel W
Transfusion. 2024; 64(7):1296-1305.
PMID: 38817044
PMC: 11251854.
DOI: 10.1111/trf.17869.
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1.
Di Teodoro G, Pirkl M, Incardona F, Vicenti I, Sonnerborg A, Kaiser R
Bioinformatics. 2024; 40(6).
PMID: 38775719
PMC: 11153833.
DOI: 10.1093/bioinformatics/btae327.
Hybrid-hybrid correction of errors in long reads with HERO.
Kang X, Xu J, Luo X, Schonhuth A
Genome Biol. 2023; 24(1):275.
PMID: 38041098
PMC: 10690975.
DOI: 10.1186/s13059-023-03112-7.
Genome-wide direct quantification of in vivo mutagenesis using high-accuracy paired-end and complementary consensus sequencing.
You X, Cao Y, Suzuki T, Shao J, Zhu B, Masumura K
Nucleic Acids Res. 2023; 51(21):e109.
PMID: 37870450
PMC: 10681716.
DOI: 10.1093/nar/gkad909.
Rapid detection of myeloid neoplasm fusions using single-molecule long-read sequencing.
Sala-Torra O, Reddy S, Hung L, Beppu L, Wu D, Radich J
PLOS Glob Public Health. 2023; 3(9):e0002267.
PMID: 37699001
PMC: 10497132.
DOI: 10.1371/journal.pgph.0002267.
Samples from patients with AML show high concordance in detection of mutations by NGS at local institutions vs central laboratories.
Borate U, Yang F, Press R, Ruppert A, Jones D, Caruthers S
Blood Adv. 2023; 7(20):6048-6054.
PMID: 37459200
PMC: 10582272.
DOI: 10.1182/bloodadvances.2022009008.