The Complete Mitochondrial Genome of Aspiorhynchus Laticeps and Its Phylogenetic Analysis

Overview

Journal Meta Gene

Publisher Elsevier

Specialty Genetics

Date 2015 Jan 22

PMID 25606405

Citations 3

Authors

Ming Jiang

Changgeng Yang

Hua Wen

Affiliations

Soon will be listed here.

Abstract

The complete nucleotide sequence of the mitochondrial genome (mitogenome) of Aspiorhynchus laticeps was determined. The length of the complete mitochondrial DNA sequence of A. laticeps is 16,591 bp, which consists of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a non-coding region 'D-loop'. Except for the D-loop, another non-coding region named replication origin of L-strand (OL) region was also found. According to the phylogenetic analysis, A. laticeps has a closer relationship with Schizothorax.

Citing Articles

Phylogenetic association of Cyprinid (Schizothorax) inferred from complete mitochondrial genome.

Rehman A, Khan M, Bibi S, Nouroz F Mitochondrial DNA B Resour. 2020; 5(3):3690-3693.

PMID: 33367062 PMC: 7655078. DOI: 10.1080/23802359.2020.1827996.

Complete mitochondrial genome from South American catfish Pseudoplatystoma reticulatum (Eigenmann & Eigenmann) and its impact in Siluriformes phylogenetic tree.

Villela L, Alves A, Varela E, Eduardo Beleza Yamagishi M, Giachetto P, da Silva N Genetica. 2017; 145(1):51-66.

PMID: 28160169 DOI: 10.1007/s10709-016-9945-7.

Phylogeography of Diptychus maculatus (Cyprinidae) endemic to the northern margin of the QTP and Tien Shan region.

Li G, Tang Y, Zhang R, Zhao K BMC Evol Biol. 2016; 16:186.

PMID: 27613240 PMC: 5017051. DOI: 10.1186/s12862-016-0756-3.

References

Knudsen B, Kohn A, Nahir B, McFadden C, Moroz L . Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica: conservation of the gene order in Euthyneura. Mol Phylogenet Evol. 2005; 38(2):459-69. DOI: 10.1016/j.ympev.2005.08.017. View

Nakatani M, Miya M, Mabuchi K, Saitoh K, Nishida M . Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol. 2011; 11:177. PMC: 3141434. DOI: 10.1186/1471-2148-11-177. View

Lavoue S, Miya M, Saitoh K, Ishiguro N, Nishida M . Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Mol Phylogenet Evol. 2006; 43(3):1096-105. DOI: 10.1016/j.ympev.2006.09.018. View

Wang C, Chen Q, Lu G, Xu J, Yang Q, Li S . Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae. Gene. 2008; 424(1-2):96-101. DOI: 10.1016/j.gene.2008.07.011. View

Foran D, Hixson J, Brown W . Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis. Nucleic Acids Res. 1988; 16(13):5841-61. PMC: 336833. DOI: 10.1093/nar/16.13.5841. View

Zhu Y, Chen Y, Cheng Q, Qiao H, Chen W . The complete mitochondrial genome sequence of Schizothorax macropogon (Cypriniformes: Cyprinidae). Mitochondrial DNA. 2013; 24(3):237-9. DOI: 10.3109/19401736.2012.752478. View

Xu D, Li P, Zhang Y, Peng Z . Comparative study of the complete mitochondrial genomes of the bronze gudgeon (Coreius heterodon) and largemouth bronze gudgeon (Coreius guichenoti). Mitochondrial DNA. 2012; 24(3):189-90. DOI: 10.3109/19401736.2012.744979. View

Lowe T, Eddy S . tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64. PMC: 146525. DOI: 10.1093/nar/25.5.955. View

Shadel G, Clayton D . Mitochondrial DNA maintenance in vertebrates. Annu Rev Biochem. 1997; 66:409-35. DOI: 10.1146/annurev.biochem.66.1.409. View

10.

Saitoh K, Chen W, Mayden R . Extensive hybridization and tetrapolyploidy in spined loach fish. Mol Phylogenet Evol. 2010; 56(3):1001-10. DOI: 10.1016/j.ympev.2010.04.021. View

11.

Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D . The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1998; 25(24):4876-82. PMC: 147148. DOI: 10.1093/nar/25.24.4876. View

12.

Curole , Kocher . Mitogenomics: digging deeper with complete mitochondrial genomes. Trends Ecol Evol. 1999; 14(10):394-398. DOI: 10.1016/s0169-5347(99)01660-2. View

13.

Gong X, Cui Z, Zhang X, Wang C . Complete mitochondrial DNA sequence of the endangered Tarim schizothoracin (Schizothorax biddulphi Günther). Mitochondrial DNA. 2012; 23(5):385-7. DOI: 10.3109/19401736.2012.696635. View

14.

Wang C, Wang J, Yang J, Lu G, Song X, Chen Q . Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes. Mol Biol Rep. 2012; 39(5):6337-42. DOI: 10.1007/s11033-012-1455-9. View

15.

Saitoh K, Sado T, Mayden R, Hanzawa N, Nakamura K, Nishida M . Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences. J Mol Evol. 2006; 63(6):826-41. DOI: 10.1007/s00239-005-0293-y. View

16.

Stoneking M, Soodyall H . Human evolution and the mitochondrial genome. Curr Opin Genet Dev. 1996; 6(6):731-6. DOI: 10.1016/s0959-437x(96)80028-1. View

17.

Saitoh K, Miya M, Inoue J, Ishiguro N, Nishida M . Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. J Mol Evol. 2003; 56(4):464-72. DOI: 10.1007/s00239-002-2417-y. View

18.

Kong X, Dong X, Zhang Y, Shi W, Wang Z, Yu Z . A novel rearrangement in the mitochondrial genome of tongue sole, Cynoglossus semilaevis: control region translocation and a tRNA gene inversion. Genome. 2009; 52(12):975-84. DOI: 10.1139/G09-069. View

19.

He S, Gu X, Mayden R, Chen W, Conway K, Chen Y . Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome. Mol Phylogenet Evol. 2007; 47(1):419-25. DOI: 10.1016/j.ympev.2007.10.012. View

20.

Morin P, Archer F, Foote A, Vilstrup J, Allen E, Wade P . Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 2010; 20(7):908-16. PMC: 2892092. DOI: 10.1101/gr.102954.109. View