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Peaks Cloaked in the Mist: the Landscape of Mammalian Replication Origins

Overview
Journal J Cell Biol
Specialty Cell Biology
Date 2015 Jan 21
PMID 25601401
Citations 56
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Abstract

Replication of mammalian genomes starts at sites termed replication origins, which historically have been difficult to locate as a result of large genome sizes, limited power of genetic identification schemes, and rareness and fragility of initiation intermediates. However, origins are now mapped by the thousands using microarrays and sequencing techniques. Independent studies show modest concordance, suggesting that mammalian origins can form at any DNA sequence but are suppressed by read-through transcription or that they can overlap the 5' end or even the entire gene. These results require a critical reevaluation of whether origins form at specific DNA elements and/or epigenetic signals or require no such determinants.

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References
1.
Ibarra A, Schwob E, Mendez J . Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication. Proc Natl Acad Sci U S A. 2008; 105(26):8956-61. PMC: 2449346. DOI: 10.1073/pnas.0803978105. View

2.
Norseen J, Thomae A, Sridharan V, Aiyar A, Schepers A, Lieberman P . RNA-dependent recruitment of the origin recognition complex. EMBO J. 2008; 27(22):3024-35. PMC: 2585170. DOI: 10.1038/emboj.2008.221. View

3.
Dazy S, Gandrillon O, Hyrien O, Prioleau M . Broadening of DNA replication origin usage during metazoan cell differentiation. EMBO Rep. 2006; 7(8):806-11. PMC: 1525144. DOI: 10.1038/sj.embor.7400736. View

4.
Kemp M, Ghosh M, Liu G, Leffak M . The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells. Nucleic Acids Res. 2005; 33(1):325-36. PMC: 546162. DOI: 10.1093/nar/gki177. View

5.
Lieberman-Aiden E, van Berkum N, Williams L, Imakaev M, Ragoczy T, Telling A . Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009; 326(5950):289-93. PMC: 2858594. DOI: 10.1126/science.1181369. View