» Articles » PMID: 25269475

The Structure, Function and Evolution of Proteins That Bind DNA and RNA

Overview
Date 2014 Oct 2
PMID 25269475
Citations 179
Authors
Affiliations
Soon will be listed here.
Abstract

Proteins that bind both DNA and RNA typify the ability of a single gene product to perform multiple functions. Such DNA- and RNA-binding proteins (DRBPs) have unique functional characteristics that stem from their specific structural features; these developed early in evolution and are widely conserved. Proteins that bind RNA have typically been considered as functionally distinct from proteins that bind DNA and studied independently. This practice is becoming outdated, in partly owing to the discovery of long non-coding RNAs (lncRNAs) that target DNA-binding proteins. Consequently, DRBPs were found to regulate many cellular processes, including transcription, translation, gene silencing, microRNA biogenesis and telomere maintenance.

Citing Articles

Exploring the Link Between Noncoding RNAs and Glycolysis in Colorectal Cancer.

Xu L, Shen Y, Zhang C, Shi T, Sheng X J Cell Mol Med. 2025; 29(4):e70443.

PMID: 39993964 PMC: 11850098. DOI: 10.1111/jcmm.70443.


Accurate prediction of nucleic acid binding proteins using protein language model.

Wu S, Xu J, Guo J Bioinform Adv. 2025; 5(1):vbaf008.

PMID: 39990254 PMC: 11845279. DOI: 10.1093/bioadv/vbaf008.


Protein-Based Degraders: From Chemical Biology Tools to Neo-Therapeutics.

Ou L, Setegne M, Elliot J, Shen F, Dassama L Chem Rev. 2025; 125(4):2120-2183.

PMID: 39818743 PMC: 11870016. DOI: 10.1021/acs.chemrev.4c00595.


Synergistic protection of nascent DNA at stalled forks by MSANTD4 and BRCA1/2-RAD51.

Xie H, Song L, Mao G, Han J, Pu J, Wu Z Nat Chem Biol. 2025; .

PMID: 39809895 DOI: 10.1038/s41589-024-01833-9.


lncRNA NORAD modulates STAT3/STAT1 balance and innate immune responses in human cells via interaction with STAT3.

Argoetti A, Shalev D, Polyak G, Shima N, Biran H, Lahav T Nat Commun. 2025; 16(1):571.

PMID: 39794357 PMC: 11723954. DOI: 10.1038/s41467-025-55822-0.


References
1.
Etchegaray J, Jones P, Inouye M . Differential thermoregulation of two highly homologous cold-shock genes, cspA and cspB, of Escherichia coli. Genes Cells. 1996; 1(2):171-8. DOI: 10.1046/j.1365-2443.1996.d01-231.x. View

2.
Xu B, Koenig R . An RNA-binding domain in the thyroid hormone receptor enhances transcriptional activation. J Biol Chem. 2004; 279(32):33051-6. DOI: 10.1074/jbc.M404930200. View

3.
Shi L, Godfrey W, Lin J, Zhao G, Kao P . NF90 regulates inducible IL-2 gene expression in T cells. J Exp Med. 2007; 204(5):971-7. PMC: 2118567. DOI: 10.1084/jem.20052078. View

4.
Tuorto F, Liebers R, Musch T, Schaefer M, Hofmann S, Kellner S . RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol. 2012; 19(9):900-5. DOI: 10.1038/nsmb.2357. View

5.
Duss O, Michel E, Yulikov M, Schubert M, Jeschke G, Allain F . Structural basis of the non-coding RNA RsmZ acting as a protein sponge. Nature. 2014; 509(7502):588-92. DOI: 10.1038/nature13271. View