» Articles » PMID: 24972318

(14)N(15)N DXMSMS Match Program for the Automated Analysis of LC/ESI-MS/MS Crosslinking Data from Experiments Using (15)N Metabolically Labeled Proteins

Overview
Journal J Proteomics
Publisher Elsevier
Specialty Biochemistry
Date 2014 Jun 28
PMID 24972318
Citations 10
Authors
Affiliations
Soon will be listed here.
Abstract

Biological Significance: The new (14)N(15)N DXMSMS Match software program is a practical tool for the efficient assignment of crosslinks from LC-MS/MS experiments using an equimolar mixture of non-labeled and (15)N metabolically labeled proteins. It greatly facilitates automated data analysis from complicated crosslinking experiments, such as those using zero-length crosslinkers and those involving only a few crosslinking and digestion site restrictions.

Citing Articles

Structure of prion β-oligomers as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations.

Serpa J, Popov K, Petrotchenko E, Dokholyan N, Borchers C Proteomics. 2021; 21(21-22):e2000298.

PMID: 34482645 PMC: 9285417. DOI: 10.1002/pmic.202000298.


Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations.

Brodie N, Popov K, Petrotchenko E, Dokholyan N, Borchers C PLoS Comput Biol. 2019; 15(3):e1006859.

PMID: 30917118 PMC: 6453469. DOI: 10.1371/journal.pcbi.1006859.


Oligomerisation of Synaptobrevin-2 Studied by Native Mass Spectrometry and Chemical Cross-Linking.

Wittig S, Haupt C, Hoffmann W, Kostmann S, Pagel K, Schmidt C J Am Soc Mass Spectrom. 2018; 30(1):149-160.

PMID: 29949059 PMC: 6318248. DOI: 10.1007/s13361-018-2000-4.


CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization.

Courcelles M, Coulombe-Huntington J, Cossette E, Gingras A, Thibault P, Tyers M J Proteome Res. 2017; 16(7):2645-2652.

PMID: 28537071 PMC: 5994346. DOI: 10.1021/acs.jproteome.7b00205.


Modeling Protein Excited-state Structures from "Over-length" Chemical Cross-links.

Ding Y, Gong Z, Dong X, Liu K, Liu Z, Liu C J Biol Chem. 2016; 292(4):1187-1196.

PMID: 27994050 PMC: 5270465. DOI: 10.1074/jbc.M116.761841.