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Cryo-EM Structure of the Small Subunit of the Mammalian Mitochondrial Ribosome

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Specialty Science
Date 2014 May 7
PMID 24799711
Citations 42
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Abstract

The mammalian mitochondrial ribosomes (mitoribosomes) are responsible for synthesizing 13 membrane proteins that form essential components of the complexes involved in oxidative phosphorylation or ATP generation for the eukaryotic cell. The mammalian 55S mitoribosome contains significantly smaller rRNAs and a large mass of mitochondrial ribosomal proteins (MRPs), including large mito-specific amino acid extensions and insertions in MRPs that are homologous to bacterial ribosomal proteins and an additional 35 mito-specific MRPs. Here we present the cryo-EM structure analysis of the small (28S) subunit (SSU) of the 55S mitoribosome. We find that the mito-specific extensions in homologous MRPs generally are involved in inter-MRP contacts and in contacts with mito-specific MRPs, suggesting a stepwise evolution of the current architecture of the mitoribosome. Although most of the mito-specific MRPs and extensions of homologous MRPs are situated on the peripheral regions, they also contribute significantly to the formation of linings of the mRNA and tRNA paths, suggesting a tailor-made structural organization of the mito-SSU for the recruitment of mito-specific mRNAs, most of which do not possess a 5' leader sequence. In addition, docking of previously published coordinates of the large (39S) subunit (LSU) into the cryo-EM map of the 55S mitoribosome reveals that mito-specific MRPs of both the SSU and LSU are involved directly in the formation of six of the 15 intersubunit bridges.

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References
1.
Trabuco L, Villa E, Schreiner E, Harrison C, Schulten K . Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography. Methods. 2009; 49(2):174-80. PMC: 2753685. DOI: 10.1016/j.ymeth.2009.04.005. View

2.
Watanabe K . Unique features of animal mitochondrial translation systems. The non-universal genetic code, unusual features of the translational apparatus and their relevance to human mitochondrial diseases. Proc Jpn Acad Ser B Phys Biol Sci. 2010; 86(1):11-39. PMC: 3417567. DOI: 10.2183/pjab.86.11. View

3.
Davies S, Rackham O, Shearwood A, Hamilton K, Narsai R, Whelan J . Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation. FEBS Lett. 2009; 583(12):1853-8. DOI: 10.1016/j.febslet.2009.04.048. View

4.
Pearce S, Nezich C, Spinazzola A . Mitochondrial diseases: translation matters. Mol Cell Neurosci. 2012; 55:1-12. DOI: 10.1016/j.mcn.2012.08.013. View

5.
Sharma M, Koc E, Datta P, Booth T, Spremulli L, Agrawal R . Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins. Cell. 2003; 115(1):97-108. DOI: 10.1016/s0092-8674(03)00762-1. View