Kretsch R, Li S, Pintilie G, Palo M, Case D, Das R
bioRxiv. 2025; .
PMID: 39896454
PMC: 11785237.
DOI: 10.1101/2025.01.23.634578.
Yatsunyk L, Neidle S
Molecules. 2024; 29(2).
PMID: 38276583
PMC: 10820154.
DOI: 10.3390/molecules29020505.
Siebert R, Ammerpohl O, Rossini M, Herb D, Rau S, Plenio M
Clin Epigenetics. 2023; 15(1):145.
PMID: 37684676
PMC: 10492394.
DOI: 10.1186/s13148-023-01560-3.
Westhof E, Watson Z, Zirbel C, Cate J
RNA. 2023; 29(7):1069-1076.
PMID: 37068913
PMC: 10275268.
DOI: 10.1261/rna.079583.123.
Krall J, Nichols P, Henen M, Vicens Q, Vogeli B
Molecules. 2023; 28(2).
PMID: 36677900
PMC: 9867160.
DOI: 10.3390/molecules28020843.
Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks.
Biedermannova L, cerny J, Maly M, Nekardova M, Schneider B
Acta Crystallogr D Struct Biol. 2022; 78(Pt 8):1032-1045.
PMID: 35916227
PMC: 9344474.
DOI: 10.1107/S2059798322006234.
Removal of Diverse and Abundant ARGs by MF-NF Process from Pig Manure and Digestate.
Samanta P, Horn H, Saravia F
Membranes (Basel). 2022; 12(7).
PMID: 35877864
PMC: 9317629.
DOI: 10.3390/membranes12070661.
Multidimensional insights into the repeated electromagnetic field stimulation and biosystems interaction in aging and age-related diseases.
Perez F, Bandeira J, Chumbiauca C, Lahiri D, Morisaki J, Rizkalla M
J Biomed Sci. 2022; 29(1):39.
PMID: 35698225
PMC: 9190166.
DOI: 10.1186/s12929-022-00825-y.
Unprecedented hour-long residence time of a cation in a left-handed G-quadruplex.
Winnerdy F, Bakalar B, Das P, Heddi B, Marchand A, Rosu F
Chem Sci. 2021; 12(20):7151-7157.
PMID: 34123342
PMC: 8153214.
DOI: 10.1039/d1sc00515d.
Occurrence and stability of lone pair-π and OH-π interactions between water and nucleobases in functional RNAs.
Kalra K, Gorle S, Cavallo L, Oliva R, Chawla M
Nucleic Acids Res. 2020; 48(11):5825-5838.
PMID: 32392301
PMC: 7293021.
DOI: 10.1093/nar/gkaa345.
The multiple flavors of GoU pairs in RNA.
Westhof E, Yusupov M, Yusupova G
J Mol Recognit. 2019; 32(8):e2782.
PMID: 31033092
PMC: 6617799.
DOI: 10.1002/jmr.2782.
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Sponer J, Bussi G, Krepl M, Banas P, Bottaro S, Cunha R
Chem Rev. 2018; 118(8):4177-4338.
PMID: 29297679
PMC: 5920944.
DOI: 10.1021/acs.chemrev.7b00427.
Effect of dC → d(mC) substitutions on the folding of intramolecular triplexes with mixed TAT and CGC base triplets.
Carr C, Ganugula R, Shikiya R, Soto A, Marky L
Biochimie. 2017; 146:156-165.
PMID: 29277568
PMC: 5811340.
DOI: 10.1016/j.biochi.2017.12.008.
Distinct Protein Hydration Water Species Defined by Spatially Resolved Spectra of Intermolecular Vibrations.
Pattni V, Vasilevskaya T, Thiel W, Heyden M
J Phys Chem B. 2017; 121(31):7431-7442.
PMID: 28636363
PMC: 5607456.
DOI: 10.1021/acs.jpcb.7b03966.
The structural stability and catalytic activity of DNA and RNA oligonucleotides in the presence of organic solvents.
Nakano S, Sugimoto N
Biophys Rev. 2017; 8(1):11-23.
PMID: 28510143
PMC: 5425737.
DOI: 10.1007/s12551-015-0188-0.
Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognition.
Krepl M, Blatter M, Clery A, Damberger F, Allain F, Sponer J
Nucleic Acids Res. 2017; 45(13):8046-8063.
PMID: 28505313
PMC: 5737849.
DOI: 10.1093/nar/gkx418.
Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.
Pasi M, Maddocks J, Lavery R
Nucleic Acids Res. 2015; 43(4):2412-23.
PMID: 25662221
PMC: 4344516.
DOI: 10.1093/nar/gkv080.
Hydration energies of protonated and sodiated thiouracils.
Wincel H
J Am Soc Mass Spectrom. 2014; 25(12):2134-42.
PMID: 25270881
PMC: 4221615.
DOI: 10.1007/s13361-014-0987-8.
Hydration of protein-RNA recognition sites.
Barik A, Bahadur R
Nucleic Acids Res. 2014; 42(15):10148-60.
PMID: 25114050
PMC: 4150782.
DOI: 10.1093/nar/gku679.
Looking for Waldo: a potential thermodynamic signature to DNA damage.
Gold B, Stone M, Marky L
Acc Chem Res. 2014; 47(4):1446-54.
PMID: 24702131
PMC: 3993888.
DOI: 10.1021/ar500061p.