Draft Genome Sequence of Pseudomonas Chlororaphis YL-1, a Biocontrol Strain Suppressing Plant Microbial Pathogens

Overview

Journal Genome Announc

Publisher American Society for Microbiology

Date 2014 Feb 1

PMID 24482513

Citations 3

Authors

Youzhou Liu

Shi-En Lu

Sonya M Baird

Junqing Qiao

Yan Du

Affiliations

Soon will be listed here.

Abstract

Pseudomonas chlororaphis YL-1 was isolated from soybean root tips and showed a broad range of antagonistic activities to microbial plant pathogens. Here, we report the high-quality draft genome sequence of YL-1, which consists of a chromosome with an estimated size of 6.8 Mb with a G+C value of 63.09%.

Citing Articles

Phenazine-1-carboxylic Acid Produced by YL-1 Is Effective against .

Liu Y, Zhou Y, Qiao J, Yu W, Pan X, Zhang T Microorganisms. 2021; 9(10).

PMID: 34683333 PMC: 8541086. DOI: 10.3390/microorganisms9102012.

Pyoverdines Are Essential for the Antibacterial Activity of Pseudomonas chlororaphis YL-1 under Low-Iron Conditions.

Liu Y, Dai C, Zhou Y, Qiao J, Tang B, Yu W Appl Environ Microbiol. 2021; 87(7).

PMID: 33452032 PMC: 8091611. DOI: 10.1128/AEM.02840-20.

Draft Genome Sequence of Rice Isolate Pseudomonas chlororaphis EA105.

McCully L, Bitzer A, Spence C, Bais H, Silby M Genome Announc. 2014; 2(6).

PMID: 25540352 PMC: 4276830. DOI: 10.1128/genomeA.01342-14.

References

Pechy-Tarr M, Bruck D, Maurhofer M, Fischer E, Vogne C, Henkels M . Molecular analysis of a novel gene cluster encoding an insect toxin in plant-associated strains of Pseudomonas fluorescens. Environ Microbiol. 2008; 10(9):2368-86. DOI: 10.1111/j.1462-2920.2008.01662.x. View

Haas D, Defago G . Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat Rev Microbiol. 2005; 3(4):307-19. DOI: 10.1038/nrmicro1129. View

Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J . SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience. 2013; 1(1):18. PMC: 3626529. DOI: 10.1186/2047-217X-1-18. View

Laville J, Blumer C, von Schroetter C, Gaia V, Defago G, Keel C . Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0. J Bacteriol. 1998; 180(12):3187-96. PMC: 107821. DOI: 10.1128/JB.180.12.3187-3196.1998. View

Selin C, Habibian R, Poritsanos N, Athukorala S, Fernando D, de Kievit T . Phenazines are not essential for Pseudomonas chlororaphis PA23 biocontrol of Sclerotinia sclerotiorum, but do play a role in biofilm formation. FEMS Microbiol Ecol. 2009; 71(1):73-83. DOI: 10.1111/j.1574-6941.2009.00792.x. View

Lugtenberg B, Kamilova F . Plant-growth-promoting rhizobacteria. Annu Rev Microbiol. 2009; 63:541-56. DOI: 10.1146/annurev.micro.62.081307.162918. View

Xiong X, Han S, Wang J, Jiang Z, Chen W, Jia N . Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25. J Bacteriol. 2010; 193(1):315-6. PMC: 3019938. DOI: 10.1128/JB.01189-10. View

Aziz R, Bartels D, Best A, DeJongh M, Disz T, Edwards R . The RAST Server: rapid annotations using subsystems technology. BMC Genomics. 2008; 9:75. PMC: 2265698. DOI: 10.1186/1471-2164-9-75. View

Mendes R, Kruijt M, de Bruijn I, Dekkers E, van der Voort M, Schneider J . Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science. 2011; 332(6033):1097-100. DOI: 10.1126/science.1203980. View

10.

Hammer P, BURD W, Hill D, Ligon J, van Pee K . Conservation of the pyrrolnitrin biosynthetic gene cluster among six pyrrolnitrin-producing strains. FEMS Microbiol Lett. 1999; 180(1):39-44. DOI: 10.1111/j.1574-6968.1999.tb08775.x. View

11.

Shen X, Chen M, Hu H, Wang W, Peng H, Xu P . Genome sequence of Pseudomonas chlororaphis GP72, a root-colonizing biocontrol strain. J Bacteriol. 2012; 194(5):1269-70. PMC: 3294805. DOI: 10.1128/JB.06713-11. View

12.

Liu H, He Y, Jiang H, Peng H, Huang X, Zhang X . Characterization of a phenazine-producing strain Pseudomonas chlororaphis GP72 with broad-spectrum antifungal activity from green pepper rhizosphere. Curr Microbiol. 2007; 54(4):302-6. DOI: 10.1007/s00284-006-0444-4. View

13.

Maddula V, Pierson E, Pierson 3rd L . Altering the ratio of phenazines in Pseudomonas chlororaphis (aureofaciens) strain 30-84: effects on biofilm formation and pathogen inhibition. J Bacteriol. 2008; 190(8):2759-66. PMC: 2293254. DOI: 10.1128/JB.01587-07. View

14.

Toyama H, Nishibayashi E, Saeki M, Adachi O, Matsushita K . Factors required for the catalytic reaction of PqqC/D which produces pyrroloquinoline quinone. Biochem Biophys Res Commun. 2007; 354(1):290-5. DOI: 10.1016/j.bbrc.2007.01.001. View

15.

Lamont I, Martin L . Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa. Microbiology (Reading). 2003; 149(Pt 4):833-842. DOI: 10.1099/mic.0.26085-0. View

16.

Choi O, Kim J, Kim J, Jeong Y, Moon J, Park C . Pyrroloquinoline quinone is a plant growth promotion factor produced by Pseudomonas fluorescens B16. Plant Physiol. 2007; 146(2):657-68. PMC: 2245851. DOI: 10.1104/pp.107.112748. View

17.

Park J, Oh S, Anderson A, Neiswender J, Kim J, Kim Y . Production of the antifungal compounds phenazine and pyrrolnitrin from Pseudomonas chlororaphis O6 is differentially regulated by glucose. Lett Appl Microbiol. 2011; 52(5):532-7. DOI: 10.1111/j.1472-765X.2011.03036.x. View

18.

Mavrodi D, Blankenfeldt W, Thomashow L . Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation. Annu Rev Phytopathol. 2006; 44:417-45. DOI: 10.1146/annurev.phyto.44.013106.145710. View

19.

Keum Y, Zhu Y, Kim J . Structure-inhibitory activity relationships of pyrrolnitrin analogues on its biosynthesis. Appl Microbiol Biotechnol. 2010; 89(3):781-9. DOI: 10.1007/s00253-010-2872-0. View

20.

Morohoshi T, Wang W, Suto T, Saito Y, Ito S, Someya N . Phenazine antibiotic production and antifungal activity are regulated by multiple quorum-sensing systems in Pseudomonas chlororaphis subsp. aurantiaca StFRB508. J Biosci Bioeng. 2013; 116(5):580-4. DOI: 10.1016/j.jbiosc.2013.04.022. View