» Articles » PMID: 24481073

Mathematical Models Light Up Plant Signaling

Overview
Journal Plant Cell
Specialties Biology
Cell Biology
Date 2014 Feb 1
PMID 24481073
Citations 15
Authors
Affiliations
Soon will be listed here.
Abstract

Plants respond to changes in the environment by triggering a suite of regulatory networks that control and synchronize molecular signaling in different tissues, organs, and the whole plant. Molecular studies through genetic and environmental perturbations, particularly in the model plant Arabidopsis thaliana, have revealed many of the mechanisms by which these responses are actuated. In recent years, mathematical modeling has become a complementary tool to the experimental approach that has furthered our understanding of biological mechanisms. In this review, we present modeling examples encompassing a range of different biological processes, in particular those regulated by light. Current issues and future directions in the modeling of plant systems are discussed.

Citing Articles

Quantifying Plant Signaling Pathways by Integrating Luminescence-Based Biosensors and Mathematical Modeling.

Ahmed S, Naqvi S, Hussain F, Awais M, Ren Y, Wu J Biosensors (Basel). 2024; 14(8).

PMID: 39194607 PMC: 11352283. DOI: 10.3390/bios14080378.


Mathematical Modeling Reveals That Sucrose Regulates Leaf Senescence via Dynamic Sugar Signaling Pathways.

Asim M, Hussain Q, Wang X, Sun Y, Liu H, Khan R Int J Mol Sci. 2022; 23(12).

PMID: 35742940 PMC: 9223756. DOI: 10.3390/ijms23126498.


Isolation and Functional Characterization of Two Homologous Genes from Mango.

Mo X, Luo C, Yu H, Chen J, Liu Y, Xie X Int J Mol Sci. 2021; 22(18).

PMID: 34575962 PMC: 8471839. DOI: 10.3390/ijms22189802.


Fifteen compelling open questions in plant cell biology.

Roeder A, Otegui M, Dixit R, Anderson C, Faulkner C, Zhang Y Plant Cell. 2021; 34(1):72-102.

PMID: 34529074 PMC: 8774073. DOI: 10.1093/plcell/koab225.


Unique and contrasting effects of light and temperature cues on plant transcriptional programs.

Jarad M, Antoniou-Kourounioti R, Hepworth J, Questa J Transcription. 2020; 11(3-4):134-159.

PMID: 33016207 PMC: 7714439. DOI: 10.1080/21541264.2020.1820299.


References
1.
Suter D, Molina N, Gatfield D, Schneider K, Schibler U, Naef F . Mammalian genes are transcribed with widely different bursting kinetics. Science. 2011; 332(6028):472-4. DOI: 10.1126/science.1198817. View

2.
Christophe A, Letort V, Hummel I, Cournede P, de Reffye P, Lecoeur J . A model-based analysis of the dynamics of carbon balance at the whole-plant level in Arabidopsis thaliana. Funct Plant Biol. 2020; 35(11):1147-1162. DOI: 10.1071/FP08099. View

3.
Hsu P, Devisetty U, Harmer S . Accurate timekeeping is controlled by a cycling activator in Arabidopsis. Elife. 2013; 2:e00473. PMC: 3639509. DOI: 10.7554/eLife.00473. View

4.
Chen M, Chory J, Fankhauser C . Light signal transduction in higher plants. Annu Rev Genet. 2004; 38:87-117. DOI: 10.1146/annurev.genet.38.072902.092259. View

5.
Niwa Y, Ito S, Nakamichi N, Mizoguchi T, Niinuma K, Yamashino T . Genetic linkages of the circadian clock-associated genes, TOC1, CCA1 and LHY, in the photoperiodic control of flowering time in Arabidopsis thaliana. Plant Cell Physiol. 2007; 48(7):925-37. DOI: 10.1093/pcp/pcm067. View