» Articles » PMID: 24297253

MycoCosm Portal: Gearing Up for 1000 Fungal Genomes

Abstract

MycoCosm is a fungal genomics portal (http://jgi.doe.gov/fungi), developed by the US Department of Energy Joint Genome Institute to support integration, analysis and dissemination of fungal genome sequences and other 'omics' data by providing interactive web-based tools. MycoCosm also promotes and facilitates user community participation through the nomination of new species of fungi for sequencing, and the annotation and analysis of resulting data. By efficiently filling gaps in the Fungal Tree of Life, MycoCosm will help address important problems associated with energy and the environment, taking advantage of growing fungal genomics resources.

Citing Articles

Illuminating ecology and distribution of the rare fungus Phellinidium pouzarii in the Bavarian Forest National Park.

Roy F, Baumann P, Ullrich R, Moll J, Bassler C, Hofrichter M Sci Rep. 2025; 15(1):8604.

PMID: 40074832 PMC: 11904187. DOI: 10.1038/s41598-025-91672-y.


Metarhizium anisopliae engineering mediated by a CRISPR/Cas9 recyclable system.

Virgilio M, Quintela E, Maciel L, Goulart G, Silva J, Cortes M Folia Microbiol (Praha). 2025; .

PMID: 39982596 DOI: 10.1007/s12223-025-01249-5.


The Marchantia polymorpha pangenome reveals ancient mechanisms of plant adaptation to the environment.

Beaulieu C, Libourel C, Mbadinga Zamar D, El Mahboubi K, Hoey D, Greiff G Nat Genet. 2025; 57(3):729-740.

PMID: 39962240 PMC: 11906373. DOI: 10.1038/s41588-024-02071-4.


Uncovering the transcriptional landscape of Fomes fomentarius during fungal-based material production through gene co-expression network analysis.

Cairns T, Freidank-Pohl C, Birke A, Regner C, Jung S, Meyer V Fungal Biol Biotechnol. 2025; 12(1):1.

PMID: 39948638 PMC: 11827164. DOI: 10.1186/s40694-024-00192-3.


Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways.

Monteiro L, Del Cerro C, Kijpornyongpan T, Yaguchi A, Bennett A, Donohoe B Commun Biol. 2025; 8(1):224.

PMID: 39939400 PMC: 11822028. DOI: 10.1038/s42003-025-07640-9.


References
1.
McCluskey K, Wiest A, Grigoriev I, Lipzen A, Martin J, Schackwitz W . Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa. G3 (Bethesda). 2012; 1(4):303-16. PMC: 3276140. DOI: 10.1534/g3.111.000307. View

2.
Hunter S, Apweiler R, Attwood T, Bairoch A, Bateman A, Binns D . InterPro: the integrative protein signature database. Nucleic Acids Res. 2008; 37(Database issue):D211-5. PMC: 2686546. DOI: 10.1093/nar/gkn785. View

3.
Arnaud M, Cerqueira G, Inglis D, Skrzypek M, Binkley J, Chibucos M . The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Res. 2011; 40(Database issue):D653-9. PMC: 3245136. DOI: 10.1093/nar/gkr875. View

4.
Cherry J, Hong E, Amundsen C, Balakrishnan R, Binkley G, Chan E . Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. 2011; 40(Database issue):D700-5. PMC: 3245034. DOI: 10.1093/nar/gkr1029. View

5.
Martin F, Aerts A, Ahren D, Brun A, Danchin E, Duchaussoy F . The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 2008; 452(7183):88-92. DOI: 10.1038/nature06556. View