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Considerations for Domestication of Novel Strains of Filamentous Fungi

Abstract

Fungi, especially filamentous fungi, are a relatively understudied, biotechnologically useful resource with incredible potential for commercial applications. These multicellular eukaryotic organisms have long been exploited for their natural production of useful commodity chemicals and proteins such as enzymes used in starch processing, detergents, food and feed production, pulping and paper making and biofuels production. The ability of filamentous fungi to use a wide range of feedstocks is another key advantage. As chassis organisms, filamentous fungi can express cellular machinery, and metabolic and signal transduction pathways from both prokaryotic and eukaryotic origins. Their genomes abound with novel genetic elements and metabolic processes that can be harnessed for biotechnology applications. Synthetic biology tools are becoming inexpensive, modular, and expansive while systems biology is beginning to provide the level of understanding required to design increasingly complex synthetic systems. This review covers the challenges of working in filamentous fungi and offers a perspective on the approaches needed to exploit fungi as microbial cell factories.

References
1.
Kan E, Katsuyama Y, Maruyama J, Tamano K, Koyama Y, Ohnishi Y . Production of the plant polyketide curcumin in : strengthening malonyl-CoA supply for yield improvement. Biosci Biotechnol Biochem. 2019; 83(7):1372-1381. DOI: 10.1080/09168451.2019.1606699. View

2.
Ilmen M, Onnela M, Klemsdal S, Keranen S, Penttila M . Functional analysis of the cellobiohydrolase I promoter of the filamentous fungus Trichoderma reesei. Mol Gen Genet. 1996; 253(3):303-14. DOI: 10.1007/pl00008597. View

3.
Khaldi N, Seifuddin F, Turner G, Haft D, Nierman W, Wolfe K . SMURF: Genomic mapping of fungal secondary metabolite clusters. Fungal Genet Biol. 2010; 47(9):736-41. PMC: 2916752. DOI: 10.1016/j.fgb.2010.06.003. View

4.
Schaff H, Dey P, Heiss C, Keiser G, Moro T, Azadi P . Characterization of the need for galactofuranose during the Neurospora crassa life cycle. Fungal Genet Biol. 2023; 168:103826. DOI: 10.1016/j.fgb.2023.103826. View

5.
Qi X, Su X, Guo H, Qi J, Cheng H . A ku70 null mutant improves gene targeting frequency in the fungal pathogen Verticillium dahliae. World J Microbiol Biotechnol. 2015; 31(12):1889-97. DOI: 10.1007/s11274-015-1907-1. View