Draft Genome Sequence of Marine Cyanobacterium Synechococcus Sp. Strain NKBG15041c

Overview

Journal Genome Announc

Publisher American Society for Microbiology

Date 2013 Nov 29

PMID 24285664

Citations 6

Authors

Tomoko Yoshino

Toru Honda

Masayoshi Tanaka

Tsuyoshi Tanaka

Affiliations

Soon will be listed here.

Abstract

Synechococcus sp. strain NKBG15041c was isolated as a fast-growing marine cyanobacterium. Genetic transformation techniques using this strain have been well established for metabolic engineering. Here we report the draft genome sequence for this strain, consisting of 44 contigs containing a total of 3,180,043 bp and 3,224 putative protein-coding genes.

Citing Articles

Molecular Characterization of the MoxR AAA+ ATPase of sp. Strain NKBG15041c.

Mano K, Noi K, Oe K, Mochizuki T, Morishima K, Inoue R Int J Mol Sci. 2024; 25(18).

PMID: 39337443 PMC: 11432383. DOI: 10.3390/ijms25189955.

Genera specific distribution of DEAD-box RNA helicases in cyanobacteria.

Whitford D, Whitman B, Owttrim G Microb Genom. 2021; 7(3).

PMID: 33539277 PMC: 8190605. DOI: 10.1099/mgen.0.000517.

Glycogen Production in Marine Cyanobacterial Strain Synechococcus sp. NKBG 15041c.

Badary A, Takamatsu S, Nakajima M, Ferri S, Lindblad P, Sode K Mar Biotechnol (NY). 2018; 20(2):109-117.

PMID: 29330710 DOI: 10.1007/s10126-017-9792-2.

Complete Genome Sequence of a Coastal Cyanobacterium, sp. Strain NIES-970.

Shimura Y, Hirose Y, Misawa N, Wakazuki S, Fujisawa T, Nakamura Y Genome Announc. 2017; 5(14).

PMID: 28385852 PMC: 5383900. DOI: 10.1128/genomeA.00139-17.

The development and characterization of an exogenous green-light-regulated gene expression system in marine cyanobacteria.

Badary A, Abe K, Ferri S, Kojima K, Sode K Mar Biotechnol (NY). 2015; 17(3):245-51.

PMID: 25638493 DOI: 10.1007/s10126-015-9616-1.

References

Sode K, Tatara M, Takeyama H, Burgess J, Matsunaga T . Conjugative gene transfer in marine cyanobacteria: Synechococcus sp., Synechocystis sp. and Pseudanabaena sp. Appl Microbiol Biotechnol. 1992; 37(3):369-73. DOI: 10.1007/BF00210994. View

Zhou J, Zhang H, Zhang Y, Li Y, Ma Y . Designing and creating a modularized synthetic pathway in cyanobacterium Synechocystis enables production of acetone from carbon dioxide. Metab Eng. 2012; 14(4):394-400. DOI: 10.1016/j.ymben.2012.03.005. View

Huang H, Camsund D, Lindblad P, Heidorn T . Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology. Nucleic Acids Res. 2010; 38(8):2577-93. PMC: 2860132. DOI: 10.1093/nar/gkq164. View

Peralta-Yahya P, Keasling J . Advanced biofuel production in microbes. Biotechnol J. 2010; 5(2):147-62. DOI: 10.1002/biot.200900220. View

Varman A, Xiao Y, Pakrasi H, Tang Y . Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production. Appl Environ Microbiol. 2012; 79(3):908-14. PMC: 3568544. DOI: 10.1128/AEM.02827-12. View

Yu R, Yamada A, Watanabe K, Yazawa K, Takeyama H, Matsunaga T . Production of eicosapentaenoic acid by a recombinant marine cyanobacterium, Synechococcus sp. Lipids. 2000; 35(10):1061-4. DOI: 10.1007/s11745-000-0619-6. View

Peralta-Yahya P, Zhang F, del Cardayre S, Keasling J . Microbial engineering for the production of advanced biofuels. Nature. 2012; 488(7411):320-8. DOI: 10.1038/nature11478. View

Wang W, Liu X, Lu X . Engineering cyanobacteria to improve photosynthetic production of alka(e)nes. Biotechnol Biofuels. 2013; 6(1):69. PMC: 3679977. DOI: 10.1186/1754-6834-6-69. View

Lindberg P, Park S, Melis A . Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism. Metab Eng. 2009; 12(1):70-9. DOI: 10.1016/j.ymben.2009.10.001. View

10.

Ruffing A . Engineered cyanobacteria: teaching an old bug new tricks. Bioeng Bugs. 2011; 2(3):136-49. DOI: 10.4161/bbug.2.3.15285. View

11.

Sode K, Tatara M, Hatano N, Matsunaga T . Foreign gene expression in marine cyanobacteria under pseudo-continuous culture. J Biotechnol. 1994; 33(3):243-8. DOI: 10.1016/0168-1656(94)90072-8. View

12.

Lan E, Liao J . ATP drives direct photosynthetic production of 1-butanol in cyanobacteria. Proc Natl Acad Sci U S A. 2012; 109(16):6018-23. PMC: 3341080. DOI: 10.1073/pnas.1200074109. View

13.

Sode , Yamamoto , Hatano . Construction of a marine cyanobacterial strain with increased heavy metal ion tolerance by introducing exogenic metallothionein gene. J Mar Biotechnol. 1998; 6(3):174-7. View

14.

Lagesen K, Hallin P, Rodland E, Staerfeldt H, Rognes T, Ussery D . RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007; 35(9):3100-8. PMC: 1888812. DOI: 10.1093/nar/gkm160. View