» Articles » PMID: 24037223

Structural Evaluation and Analyses of Tumor Differentiation Factor

Overview
Journal Protein J
Publisher Springer
Specialty Biochemistry
Date 2013 Sep 17
PMID 24037223
Citations 3
Authors
Affiliations
Soon will be listed here.
Abstract

Tumor differentiation factor (TDF) is a protein produced by the pituitary and secreted into the blood stream. The mechanism of its action has still not been elucidated, although the associated protein receptor was identified. Furthermore, the TDF protein does not have any homology with other known proteins, and the crystal structure of TDF also is not available at this time. To gain some insight into the structure of this rather underexplored protein, we have performed a molecular dynamics simulation of a model TDF structure. The structural stability of this protein is evaluated as a function of time. The time dependent structural changes of four cysteine residues present in this structure also are explored.

Citing Articles

Computational Investigation of Selected Spike Protein Mutations in SARS-CoV-2: Delta, Omicron, and Some Circulating Subvariants.

Roy U Pathogens. 2024; 13(1).

PMID: 38276156 PMC: 10820870. DOI: 10.3390/pathogens13010010.


Structure and Function of an Inflammatory Cytokine, Interleukin-2, Analyzed Using the Bioinformatic Approach.

Roy U Protein J. 2019; 38(5):525-536.

PMID: 31006082 DOI: 10.1007/s10930-019-09833-8.


Structural Characterizations of the Fas Receptor and the Fas-Associated Protein with Death Domain Interactions.

Roy U Protein J. 2016; 35(1):51-60.

PMID: 26743763 DOI: 10.1007/s10930-015-9646-6.

References
1.
Manwar Hussain M, Shaik N, Al-Aama J, Asfour H, Khan F, Masoodi T . In silico analysis of Single Nucleotide Polymorphisms (SNPs) in human BRAF gene. Gene. 2012; 508(2):188-96. DOI: 10.1016/j.gene.2012.07.014. View

2.
Ngounou Wetie A, Sokolowska I, Wormwood K, Beglinger K, Michel T, Thome J . Mass spectrometry for the detection of potential psychiatric biomarkers. J Mol Psychiatry. 2014; 1(1):8. PMC: 4223884. DOI: 10.1186/2049-9256-1-8. View

3.
Iavarone A, Patriksson A, van der Spoel D, Parks J . Fluorescence probe of Trp-cage protein conformation in solution and in gas phase. J Am Chem Soc. 2007; 129(21):6726-35. DOI: 10.1021/ja065092s. View

4.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View

5.
Shaikh S, Li J, Enkavi G, Wen P, Huang Z, Tajkhorshid E . Visualizing functional motions of membrane transporters with molecular dynamics simulations. Biochemistry. 2013; 52(4):569-87. PMC: 3560430. DOI: 10.1021/bi301086x. View