Streptacidiphilus Hamsterleyensis Sp. Nov., Isolated from a Spruce Forest Soil

Overview

Journal Antonie Van Leeuwenhoek

Publisher Springer

Specialty Microbiology

Date 2013 Aug 31

PMID 23989983

Citations 5

Authors

Patrycja Golinska

Byung-Yong Kim

Hanna Dahm

Michael Goodfellow

Affiliations

Soon will be listed here.

Abstract

Three acidophilic actinobacteria, isolates LSCA2, FGG8 and HSCA14(T), recovered from spruce litter were examined using a polyphasic approach. Chemotaxonomic and morphological properties of the isolates were found to be consistent with their classification in the genus Streptacidiphilus. The isolates were shown to have identical 16S rRNA gene sequences and were most closely related to Streptacidiphilus neutrinimicus DSM 41755(T) (99.9 % similarity). However, DNA:DNA relatedness between isolate HSCA14(T) and the type strain of S. neutrinimicus was found to be low at 44.0 (±14.1) %. A combination of phenotypic features, including degradative and nutritional characteristics were shown to distinguish the isolates from their nearest phylogenetic neighbours. Data from this study show that the isolates form a novel species in the genus for which the name S. hamsterleyensis sp. nov. is proposed. The type strain is HSCA 14(T) (=DSM 45900(T) = KACC 17456(T) = NCIMB 14865(T)).

Citing Articles

Generation of a high quality library of bioactive filamentous actinomycetes from extreme biomes using a culture-based bioprospecting strategy.

Swiecimska M, Golinska P, Goodfellow M Front Microbiol. 2023; 13:1054384.

PMID: 36741889 PMC: 9893292. DOI: 10.3389/fmicb.2022.1054384.

Atypical Spirotetronate Polyketides Identified in the Underexplored Genus .

Elsayed S, Genta-Jouve G, Carrion V, Nibbering P, Siegler M, de Boer W J Org Chem. 2020; 85(16):10648-10657.

PMID: 32691599 PMC: 7497648. DOI: 10.1021/acs.joc.0c01210.

Actinobacterial-mediated synthesis of silver nanoparticles and their activity against pathogenic bacteria.

Wypij M, Golinska P, Dahm H, Rai M IET Nanobiotechnol. 2017; 11(3):336-342.

PMID: 28476992 PMC: 8676451. DOI: 10.1049/iet-nbt.2016.0112.

Streptacidiphilus toruniensis sp. nov., isolated from a pine forest soil.

Golinska P, Dahm H, Goodfellow M Antonie Van Leeuwenhoek. 2016; 109(12):1583-1591.

PMID: 27558132 PMC: 5104812. DOI: 10.1007/s10482-016-0759-5.

Actinospica durhamensis sp. nov., isolated from a spruce forest soil.

Golinska P, Zucchi T, Silva L, Dahm H, Goodfellow M Antonie Van Leeuwenhoek. 2015; 108(2):435-42.

PMID: 26026797 PMC: 4491342. DOI: 10.1007/s10482-015-0496-1.

References

Goodfellow M, Kumar Y, Labeda D, Sembiring L . The Streptomyces violaceusniger clade: a home for Streptomycetes with rugose ornamented spores. Antonie Van Leeuwenhoek. 2007; 92(2):173-99. DOI: 10.1007/s10482-007-9146-6. View

Staneck J, Roberts G . Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol. 1974; 28(2):226-31. PMC: 186691. DOI: 10.1128/am.28.2.226-231.1974. View

Golinska P, Ahmed L, Wang D, Goodfellow M . Streptacidiphilus durhamensis sp. nov., isolated from a spruce forest soil. Antonie Van Leeuwenhoek. 2013; 104(2):199-206. PMC: 3695678. DOI: 10.1007/s10482-013-9938-9. View

ODonnell A, Falconer C, Goodfellow M, Ward A, Williams E . Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. Antonie Van Leeuwenhoek. 1993; 64(3-4):325-40. DOI: 10.1007/BF00873091. View

Williams S, Flowers T . The influence of pH on starch hydrolysis by neutrophilic and acidophilic streptomycetes. Microbios. 1978; 20(80):99-106. View

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S . MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011; 28(10):2731-9. PMC: 3203626. DOI: 10.1093/molbev/msr121. View

Jones K . FRESH ISOLATES OF ACTINOMYCETES IN WHICH THE PRESENCE OF SPOROGENOUS AERIAL MYCELIA IS A FLUCTUATING CHARACTERISTIC. J Bacteriol. 1949; 57(2):141-5. PMC: 385488. DOI: 10.1128/jb.57.2.141-145.1949. View

Gonzalez J, Saiz-Jimenez C . A simple fluorimetric method for the estimation of DNA-DNA relatedness between closely related microorganisms by thermal denaturation temperatures. Extremophiles. 2004; 9(1):75-9. DOI: 10.1007/s00792-004-0417-0. View

Labeda D, Goodfellow M, Brown R, Ward A, Lanoot B, Vanncanneyt M . Phylogenetic study of the species within the family Streptomycetaceae. Antonie Van Leeuwenhoek. 2011; 101(1):73-104. DOI: 10.1007/s10482-011-9656-0. View

10.

Goodfellow M, Williams S . Ecology of actinomycetes. Annu Rev Microbiol. 1983; 37:189-216. DOI: 10.1146/annurev.mi.37.100183.001201. View

11.

Felsenstein J . CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP. Evolution. 2017; 39(4):783-791. DOI: 10.1111/j.1558-5646.1985.tb00420.x. View

12.

Cho S, Han J, Ko H, Kim S . Streptacidiphilus anmyonensis sp. nov., Streptacidiphilus rugosus sp. nov. and Streptacidiphilus melanogenes sp. nov., acidophilic actinobacteria isolated from Pinus soils. Int J Syst Evol Microbiol. 2008; 58(Pt 7):1566-70. DOI: 10.1099/ijs.0.65480-0. View

13.

Girard G, Traag B, Sangal V, Mascini N, Hoskisson P, Goodfellow M . A novel taxonomic marker that discriminates between morphologically complex actinomycetes. Open Biol. 2013; 3(10):130073. PMC: 3814722. DOI: 10.1098/rsob.130073. View

14.

Kim O, Cho Y, Lee K, Yoon S, Kim M, Na H . Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol. 2011; 62(Pt 3):716-721. DOI: 10.1099/ijs.0.038075-0. View

15.

Kim S, Lonsdale J, Seong C, Goodfellow M . Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici (1943)AL) emend. Rainey et al. 1997. Antonie Van Leeuwenhoek. 2003; 83(2):107-16. DOI: 10.1023/a:1023397724023. View

16.

Gonzalez J, Saiz-Jimenez C . A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol. 2002; 4(11):770-3. DOI: 10.1046/j.1462-2920.2002.00362.x. View

17.

Kuester E, Williams S . SELECTION OF MEDIA FOR ISOLATION OF STREPTOMYCETES. Nature. 1964; 202:928-9. DOI: 10.1038/202928a0. View

18.

Guindon S, Gascuel O . A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003; 52(5):696-704. DOI: 10.1080/10635150390235520. View

19.

Golinska P, Wang D, Goodfellow M . Nocardia aciditolerans sp. nov., isolated from a spruce forest soil. Antonie Van Leeuwenhoek. 2013; 103(5):1079-88. PMC: 3621993. DOI: 10.1007/s10482-013-9887-3. View

20.

Williams S, Goodfellow M, Alderson G, Wellington E, Sneath P, Sackin M . Numerical classification of Streptomyces and related genera. J Gen Microbiol. 1983; 129(6):1743-813. DOI: 10.1099/00221287-129-6-1743. View