» Articles » PMID: 23674679

Role of Aspartate 132 at the Orifice of a Proton Pathway in Cytochrome C Oxidase

Overview
Specialty Science
Date 2013 May 16
PMID 23674679
Citations 12
Authors
Affiliations
Soon will be listed here.
Abstract

Proton transfer across biological membranes underpins central processes in biological systems, such as energy conservation and transport of ions and molecules. In the membrane proteins involved in these processes, proton transfer takes place through specific pathways connecting the two sides of the membrane via control elements within the protein. It is commonly believed that acidic residues are required near the orifice of such proton pathways to facilitate proton uptake. In cytochrome c oxidase, one such pathway starts near a conserved Asp-132 residue. Results from earlier studies have shown that replacement of Asp-132 by, e.g., Asn, slows proton uptake by a factor of ∼5,000. Here, we show that proton uptake at full speed (∼10(4) s(-1)) can be restored in the Asp-132-Asn oxidase upon introduction of a second structural modification further inside the pathway (Asn-139-Thr) without compensating for the loss of the negative charge. This proton-uptake rate was insensitive to Zn(2+) addition, which in the wild-type cytochrome c oxidase slows the reaction, indicating that Asp-132 is required for Zn(2+) binding. Furthermore, in the absence of Asp-132 and with Thr at position 139, at high pH (>9), proton uptake was significantly accelerated. Thus, the data indicate that Asp-132 is not strictly required for maintaining rapid proton uptake. Furthermore, despite the rapid proton uptake in the Asn-139-Thr/Asp-132-Asn mutant cytochrome c oxidase, proton pumping was impaired, which indicates that the segment around these residues is functionally linked to pumping.

Citing Articles

A Buried Water Network Modulates the Activity of the Disulphide Catalyst DsbA.

Wang G, Qin J, Verderosa A, Hor L, Santos-Martin C, Paxman J Antioxidants (Basel). 2023; 12(2).

PMID: 36829940 PMC: 9952396. DOI: 10.3390/antiox12020380.


Structure and Mechanism of Respiratory III-IV Supercomplexes in Bioenergetic Membranes.

Brzezinski P, Moe A, Adelroth P Chem Rev. 2021; 121(15):9644-9673.

PMID: 34184881 PMC: 8361435. DOI: 10.1021/acs.chemrev.1c00140.


Structural changes at the surface of cytochrome c oxidase alter the proton-pumping stoichiometry.

Berg J, Liu J, Svahn E, Ferguson-Miller S, Brzezinski P Biochim Biophys Acta Bioenerg. 2019; 1861(2):148116.

PMID: 31733183 PMC: 6943178. DOI: 10.1016/j.bbabio.2019.148116.


Cavity hydration dynamics in cytochrome oxidase and functional implications.

Son C, Yethiraj A, Cui Q Proc Natl Acad Sci U S A. 2017; 114(42):E8830-E8836.

PMID: 28973914 PMC: 5651761. DOI: 10.1073/pnas.1707922114.


Understanding the essential proton-pumping kinetic gates and decoupling mutations in cytochrome oxidase.

Liang R, Swanson J, Wikstrom M, Voth G Proc Natl Acad Sci U S A. 2017; 114(23):5924-5929.

PMID: 28536198 PMC: 5468613. DOI: 10.1073/pnas.1703654114.


References
1.
Qin L, Hiser C, Mulichak A, Garavito R, Ferguson-Miller S . Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase. Proc Natl Acad Sci U S A. 2006; 103(44):16117-22. PMC: 1616942. DOI: 10.1073/pnas.0606149103. View

2.
Mills D, Schmidt B, Hiser C, Westley E, Ferguson-Miller S . Membrane potential-controlled inhibition of cytochrome c oxidase by zinc. J Biol Chem. 2002; 277(17):14894-901. DOI: 10.1074/jbc.M111922200. View

3.
Dolinsky T, Czodrowski P, Li H, Nielsen J, Jensen J, Klebe G . PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res. 2007; 35(Web Server issue):W522-5. PMC: 1933214. DOI: 10.1093/nar/gkm276. View

4.
Lepp H, Salomonsson L, Zhu J, Gennis R, Brzezinski P . Impaired proton pumping in cytochrome c oxidase upon structural alteration of the D pathway. Biochim Biophys Acta. 2008; 1777(7-8):897-903. PMC: 4309377. DOI: 10.1016/j.bbabio.2008.04.013. View

5.
Brzezinski P, Johansson A . Variable proton-pumping stoichiometry in structural variants of cytochrome c oxidase. Biochim Biophys Acta. 2010; 1797(6-7):710-23. DOI: 10.1016/j.bbabio.2010.02.020. View