Complete Genome Sequence of the Industrial Strain Gluconobacter Oxydans H24

Overview

Journal Genome Announc

Publisher American Society for Microbiology

Date 2013 Mar 9

PMID 23472221

Citations 7

Authors

Xin Ge

Yan Zhao

Wei Hou

Weicai Zhang

Weiwei Chen

Jianhua Wang

Nan Zhao

Jian Lin

Wenxi Wang

Mengxia Chen

Qingge Wang

Yinghui Jiao

Zhigang Yuan

Xianghua Xiong

Affiliations

Soon will be listed here.

Abstract

is characterized by its ability to incompletely oxidize carbohydrates and alcohols. The high yields of its oxidation products and complete secretion into the medium make it important for industrial use. We report the finished genome sequence of H24, an industrial strain with high l-sorbose productivity.

Citing Articles

Whole genome analysis of DS1 and its beneficial effects on plant growth.

Mukhtar S, Farooq M, Baig D, Amin I, Lazarovits G, Malik K 3 Biotech. 2021; 11(10):450.

PMID: 34631351 PMC: 8473476. DOI: 10.1007/s13205-021-02996-1.

Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation.

Wang E, Ding M, Ma Q, Dong X, Yuan Y Microb Cell Fact. 2016; 15:21.

PMID: 26809519 PMC: 4727326. DOI: 10.1186/s12934-016-0418-6.

Complete genome and gene expression analyses of Asaia bogorensis reveal unique responses to culture with mammalian cells as a potential opportunistic human pathogen.

Kawai M, Higashiura N, Hayasaki K, Okamoto N, Takami A, Hirakawa H DNA Res. 2015; 22(5):357-66.

PMID: 26358298 PMC: 4596401. DOI: 10.1093/dnares/dsv018.

Draft genome sequence of Gluconobacter thailandicus NBRC 3257.

Matsutani M, Suzuki H, Yakushi T, Matsushita K Stand Genomic Sci. 2014; 9(3):614-23.

PMID: 25197448 PMC: 4149004. DOI: 10.4056/sigs.4778605.

Acetic acid bacteria genomes reveal functional traits for adaptation to life in insect guts.

Chouaia B, Gaiarsa S, Crotti E, Comandatore F, Degli Esposti M, Ricci I Genome Biol Evol. 2014; 6(4):912-20.

PMID: 24682158 PMC: 4007555. DOI: 10.1093/gbe/evu062.

References

Li R, Yu C, Li Y, Lam T, Yiu S, Kristiansen K . SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics. 2009; 25(15):1966-7. DOI: 10.1093/bioinformatics/btp336. View

Saito Y, Ishii Y, Hayashi H, Imao Y, Akashi T, Yoshikawa K . Cloning of genes coding for L-sorbose and L-sorbosone dehydrogenases from Gluconobacter oxydans and microbial production of 2-keto-L-gulonate, a precursor of L-ascorbic acid, in a recombinant G. oxydans strain. Appl Environ Microbiol. 1997; 63(2):454-60. PMC: 168335. DOI: 10.1128/aem.63.2.454-460.1997. View

Prust C, Hoffmeister M, Liesegang H, Wiezer A, Fricke W, Ehrenreich A . Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat Biotechnol. 2005; 23(2):195-200. DOI: 10.1038/nbt1062. View

Boeckmann B, Bairoch A, Apweiler R, Blatter M, Estreicher A, Gasteiger E . The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 2003; 31(1):365-70. PMC: 165542. DOI: 10.1093/nar/gkg095. View

Felder M, Gupta A, Verma V, Kumar A, Qazi G, Cullum J . The pyrroloquinoline quinone synthesis genes of Gluconobacter oxydans. FEMS Microbiol Lett. 2000; 193(2):231-6. DOI: 10.1111/j.1574-6968.2000.tb09429.x. View

Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M . The KEGG resource for deciphering the genome. Nucleic Acids Res. 2003; 32(Database issue):D277-80. PMC: 308797. DOI: 10.1093/nar/gkh063. View

Shinjoh M, Tazoe M, Hoshino T . NADPH-dependent L-sorbose reductase is responsible for L-sorbose assimilation in Gluconobacter suboxydans IFO 3291. J Bacteriol. 2002; 184(3):861-3. PMC: 139518. DOI: 10.1128/JB.184.3.861-863.2002. View

Lagesen K, Hallin P, Rodland E, Staerfeldt H, Rognes T, Ussery D . RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007; 35(9):3100-8. PMC: 1888812. DOI: 10.1093/nar/gkm160. View

Schattner P, Brooks A, Lowe T . The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 2005; 33(Web Server issue):W686-9. PMC: 1160127. DOI: 10.1093/nar/gki366. View

10.

Delcher A, Bratke K, Powers E, Salzberg S . Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007; 23(6):673-9. PMC: 2387122. DOI: 10.1093/bioinformatics/btm009. View

11.

Deppenmeier U, Hoffmeister M, Prust C . Biochemistry and biotechnological applications of Gluconobacter strains. Appl Microbiol Biotechnol. 2002; 60(3):233-42. DOI: 10.1007/s00253-002-1114-5. View

12.

Tatusov R, Natale D, Garkavtsev I, Tatusova T, Shankavaram U, Rao B . The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 2000; 29(1):22-8. PMC: 29819. DOI: 10.1093/nar/29.1.22. View

13.

Miyazaki T, Tomiyama N, Shinjoh M, Hoshino T . Molecular cloning and functional expression of D-sorbitol dehydrogenase from Gluconobacter suboxydans IF03255, which requires pyrroloquinoline quinone and hydrophobic protein SldB for activity development in E. coli. Biosci Biotechnol Biochem. 2002; 66(2):262-70. DOI: 10.1271/bbb.66.262. View

14.

Toyama H, Soemphol W, Moonmangmee D, Adachi O, Matsushita K . Molecular properties of membrane-bound FAD-containing D-sorbitol dehydrogenase from thermotolerant Gluconobacter frateurii isolated from Thailand. Biosci Biotechnol Biochem. 2005; 69(6):1120-9. DOI: 10.1271/bbb.69.1120. View

15.

Sugisawa T, Hoshino T . Purification and properties of membrane-bound D-sorbitol dehydrogenase from Gluconobacter suboxydans IFO 3255. Biosci Biotechnol Biochem. 2002; 66(1):57-64. DOI: 10.1271/bbb.66.57. View