Complete Genome Sequence of Oscillibacter Valericigenes Sjm18-20(T) (=NBRC 101213(T))

Overview

Journal Stand Genomic Sci

Publisher Biomed Central

Specialty Genetics

Date 2013 Feb 15

PMID 23408234

Citations 18

Authors

Yoko Katano

Shun Fujinami

Akatsuki Kawakoshi

Hidekazu Nakazawa

Syoko Oji

Takao Iino

Akio Oguchi

Akiho Ankai

Shigehiro Fukui

Yasuyuki Terui

Sachi Kamata

Takeshi Harada

Satoshi Tanikawa

Ken-Ichiro Suzuki

Nobuyuki Fujita

Affiliations

Soon will be listed here.

Abstract

Oscillibacter valericigenes is a mesophilic, strictly anaerobic bacterium belonging to the clostridial cluster IV. Strain Sjm18-20(T) (=NBRC 101213(T) =DSM 18026(T)) is the type strain of the species and represents the genus Oscillibacter Iino et al. 2007. It was isolated from the alimentary canal of a Japanese corbicula clam (Corbicula japonica) collected on a seacoast in Shimane Prefecture in Japan. Phylogenetically, strain Sjm18-20(T) is closest to uncultured bacteria in digestive tracts, including the enriched cells thought to represent Oscillospira guilliermondii Chatton and Perard 1913. The isolated phylogenetic position and some distinct characteristics prompted us to determine the complete genome sequence. The 4,410,036 bp chromosome and the 60,586 bp plasmid were predicted to encode a total of 4,723 protein-coding genes.

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