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Domain-swapped Chain Connectivity and Gated Membrane Access in a Fab-mediated Crystal of the Human TRAAK K+ Channel

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Specialty Science
Date 2013 Jan 24
PMID 23341632
Citations 69
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Abstract

TRAAK (TWIK-related arachidonic acid-stimulated K(+) channel, K2P4.1) K(+) ion channels are expressed predominantly in the nervous system to control cellular resting membrane potential and are regulated by mechanical and chemical properties of the lipid membrane. TRAAK channels are twofold symmetric, which precludes a direct extension of gating mechanisms that close canonical fourfold symmetric K(+) channels. We present the crystal structure of human TRAAK in complex with antibody antigen-binding fragments (Fabs) at 2.75-Å resolution. In contrast to a previous structure, this structure reveals a domain-swapped chain connectivity enabled by the helical cap that exchanges two opposing outer helices 180° around the channel. An unrelated conformational change of an inner helix seals a side opening to the membrane bilayer and is associated with structural changes around the K(+)-selectivity filter that may have implications for mechanosensitivity and gating of TRAAK channels.

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References
1.
Enyedi P, Czirjak G . Molecular background of leak K+ currents: two-pore domain potassium channels. Physiol Rev. 2010; 90(2):559-605. DOI: 10.1152/physrev.00029.2009. View

2.
Brohawn S, Del Marmol J, MacKinnon R . Crystal structure of the human K2P TRAAK, a lipid- and mechano-sensitive K+ ion channel. Science. 2012; 335(6067):436-41. PMC: 3329120. DOI: 10.1126/science.1213808. View

3.
Zilberberg N, Ilan N, Goldstein S . KCNKØ: opening and closing the 2-P-domain potassium leak channel entails "C-type" gating of the outer pore. Neuron. 2001; 32(4):635-48. DOI: 10.1016/s0896-6273(01)00503-7. View

4.
Emsley P, Lohkamp B, Scott W, Cowtan K . Features and development of Coot. Acta Crystallogr D Biol Crystallogr. 2010; 66(Pt 4):486-501. PMC: 2852313. DOI: 10.1107/S0907444910007493. View

5.
Zhou Y, Kaufman A, Mackinnon R . Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution. Nature. 2001; 414(6859):43-8. DOI: 10.1038/35102009. View