Domain-swapped Chain Connectivity and Gated Membrane Access in a Fab-mediated Crystal of the Human TRAAK K+ Channel
Overview
Affiliations
TRAAK (TWIK-related arachidonic acid-stimulated K(+) channel, K2P4.1) K(+) ion channels are expressed predominantly in the nervous system to control cellular resting membrane potential and are regulated by mechanical and chemical properties of the lipid membrane. TRAAK channels are twofold symmetric, which precludes a direct extension of gating mechanisms that close canonical fourfold symmetric K(+) channels. We present the crystal structure of human TRAAK in complex with antibody antigen-binding fragments (Fabs) at 2.75-Å resolution. In contrast to a previous structure, this structure reveals a domain-swapped chain connectivity enabled by the helical cap that exchanges two opposing outer helices 180° around the channel. An unrelated conformational change of an inner helix seals a side opening to the membrane bilayer and is associated with structural changes around the K(+)-selectivity filter that may have implications for mechanosensitivity and gating of TRAAK channels.
Structure of the human K13.1 channel reveals a hydrophilic pore restriction and lipid cofactor site.
Roy-Chowdhury S, Jang S, Abderemane-Ali F, Naughton F, Grabe M, Minor Jr D Nat Struct Mol Biol. 2025; .
PMID: 40011746 DOI: 10.1038/s41594-024-01476-3.
Research progress of two-pore potassium channel in myocardial ischemia-reperfusion injury.
Zhang Y, Li J, Pan J, Deng S Front Physiol. 2024; 15:1473501.
PMID: 39534859 PMC: 11554511. DOI: 10.3389/fphys.2024.1473501.
Roy-Chowdhury S, Jang S, Abderemane-Ali F, Naughton F, Grabe M, Minor Jr D bioRxiv. 2024; .
PMID: 38979306 PMC: 11230452. DOI: 10.1101/2024.06.26.600491.
Turkaydin B, Schewe M, Riel E, Schulz F, Biedermann J, Baukrowitz T Nat Commun. 2024; 15(1):4628.
PMID: 38821927 PMC: 11143257. DOI: 10.1038/s41467-024-48823-y.
Polyamine detergents tailored for native mass spectrometry studies of membrane proteins.
Zhu Y, Peng B, Kumar S, Stover L, Chang J, Lyu J Nat Commun. 2023; 14(1):5676.
PMID: 37709761 PMC: 10502129. DOI: 10.1038/s41467-023-41429-w.