» Articles » PMID: 23118449

Complete Genome Sequence of the Novel Escherichia Coli Phage PhAPEC8

Overview
Journal J Virol
Date 2012 Nov 3
PMID 23118449
Citations 13
Authors
Affiliations
Soon will be listed here.
Abstract

Bacteriophage phAPEC8 is an Escherichia coli-infecting myovirus, isolated on an avian pathogenic Escherichia coli (APEC) strain. APEC strains cause colibacillosis in poultry, resulting in high mortality levels and important economic losses. Genomic analysis of the 147,737-bp double-stranded DNA phAPEC8 genome revealed that 53% of the 269 encoded proteins are unique to this phage. Its closest relatives include the Salmonella phage PVP-SE1 and the coliphage rv5, with 19% and 18% similar proteins, respectively. As such, phAPEC8 represents a novel, phylogenetically distinct clade within the Myoviridae, with molecular properties suitable for phage therapy applications.

Citing Articles

Characterization of two novel lytic bacteriophages having lysis potential against MDR avian pathogenic Escherichia coli strains of zoonotic potential.

Sattar S, Bailie M, Yaqoob A, Khanum S, Fatima K, Altaf A Sci Rep. 2023; 13(1):10043.

PMID: 37340022 PMC: 10282059. DOI: 10.1038/s41598-023-37176-z.


Isolation and Characterization of a Novel Phage Collection against Avian-Pathogenic .

Nicolas M, Trotereau A, Culot A, Moodley A, Atterbury R, Wagemans J Microbiol Spectr. 2023; 11(3):e0429622.

PMID: 37140373 PMC: 10269720. DOI: 10.1128/spectrum.04296-22.


Novel Host Recognition Mechanism of the K1 Capsule-Specific Phage of : Capsular Polysaccharide as the First Receptor and Lipopolysaccharide as the Secondary Receptor.

Gong Q, Wang X, Huang H, Sun Y, Qian X, Xue F J Virol. 2021; 95(18):e0092021.

PMID: 34191582 PMC: 8387036. DOI: 10.1128/JVI.00920-21.


Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.

Gilroy R, Ravi A, Getino M, Pursley I, Horton D, Alikhan N PeerJ. 2021; 9:e10941.

PMID: 33868800 PMC: 8035907. DOI: 10.7717/peerj.10941.


Exploring the Remarkable Diversity of Culturable Phages in the Danish Wastewater Environment.

Olsen N, Forero-Junco L, Kot W, Hansen L Viruses. 2020; 12(9).

PMID: 32899836 PMC: 7552041. DOI: 10.3390/v12090986.


References
1.
Schattner P, Brooks A, Lowe T . The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 2005; 33(Web Server issue):W686-9. PMC: 1160127. DOI: 10.1093/nar/gki366. View

2.
Blattner F, Plunkett 3rd G, Bloch C, Perna N, Burland V, Riley M . The complete genome sequence of Escherichia coli K-12. Science. 1997; 277(5331):1453-62. DOI: 10.1126/science.277.5331.1453. View

3.
Besemer J, Lomsadze A, Borodovsky M . GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 2001; 29(12):2607-18. PMC: 55746. DOI: 10.1093/nar/29.12.2607. View

4.
Binnewies T, Motro Y, Hallin P, Lund O, Dunn D, La T . Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics. 2006; 6(3):165-85. DOI: 10.1007/s10142-006-0027-2. View

5.
Li G, Laturnus C, Ewers C, Wieler L . Identification of genes required for avian Escherichia coli septicemia by signature-tagged mutagenesis. Infect Immun. 2005; 73(5):2818-27. PMC: 1087346. DOI: 10.1128/IAI.73.5.2818-2827.2005. View