Tools for Mapping High-throughput Sequencing Data

Overview

Journal Bioinformatics

Publisher Oxford University Press

Specialty Biology

Date 2012 Oct 13

PMID 23060614

Citations 97

Authors

Nuno A Fonseca

Johan Rung

Alvis Brazma

John C Marioni

Affiliations

Soon will be listed here.

Abstract

Motivation: A ubiquitous and fundamental step in high-throughput sequencing analysis is the alignment (mapping) of the generated reads to a reference sequence. To accomplish this task, numerous software tools have been proposed. Determining the mappers that are most suitable for a specific application is not trivial.

Results: This survey focuses on classifying mappers through a wide number of characteristics. The goal is to allow practitioners to compare the mappers more easily and find those that are most suitable for their specific problem.

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