» Articles » PMID: 22582382

Draft Genome Sequences of the Diarrheagenic Escherichia Coli Collection

Abstract

We report the draft genome sequences of the collection referred to as the Escherichia coli DECA collection, which was assembled to contain representative isolates of the 15 most common diarrheagenic clones in humans (http://shigatox.net/new/). These genomes represent a valuable resource to the community of researchers who examine these enteric pathogens.

Citing Articles

Transcriptomic Analysis of Shiga Toxin-Producing during Initial Contact with Cattle Colonic Explants.

Stromberg Z, Masonbrink R, Mellata M Microorganisms. 2020; 8(11).

PMID: 33120988 PMC: 7693793. DOI: 10.3390/microorganisms8111662.


Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a.

Ogura Y, Seto K, Morimoto Y, Nakamura K, Sato M, Gotoh Y Emerg Infect Dis. 2018; 24(12):2219-2227.

PMID: 30457544 PMC: 6256406. DOI: 10.3201/eid2412.180404.


The Mobilome; A Major Contributor to -Positive O26:H11 Strains Intra-Serotype Diversity.

Delannoy S, Mariani-Kurkdjian P, Webb H, Bonacorsi S, Fach P Front Microbiol. 2017; 8:1625.

PMID: 28932209 PMC: 5592225. DOI: 10.3389/fmicb.2017.01625.


Comparative Genomics Provides Insight into the Diversity of the Attaching and Effacing Escherichia coli Virulence Plasmids.

Hazen T, Kaper J, Nataro J, Rasko D Infect Immun. 2015; 83(10):4103-17.

PMID: 26238712 PMC: 4567640. DOI: 10.1128/IAI.00769-15.


Characterization of the bacterial gut microbiota of piglets suffering from new neonatal porcine diarrhoea.

Hermann-Bank M, Skovgaard K, Stockmarr A, Strube M, Larsen N, Kongsted H BMC Vet Res. 2015; 11:139.

PMID: 26099928 PMC: 4476181. DOI: 10.1186/s12917-015-0419-4.


References
1.
Kotloff K, Winickoff J, Ivanoff B, Clemens J, Swerdlow D, Sansonetti P . Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull World Health Organ. 1999; 77(8):651-66. PMC: 2557719. View

2.
Reid S, Herbelin C, Bumbaugh A, Selander R, Whittam T . Parallel evolution of virulence in pathogenic Escherichia coli. Nature. 2000; 406(6791):64-7. DOI: 10.1038/35017546. View

3.
Rasko D, Rosovitz M, Myers G, Mongodin E, Fricke W, Gajer P . The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol. 2008; 190(20):6881-93. PMC: 2566221. DOI: 10.1128/JB.00619-08. View

4.
Mutreja A, Kim D, Thomson N, Connor T, Lee J, Kariuki S . Evidence for several waves of global transmission in the seventh cholera pandemic. Nature. 2011; 477(7365):462-5. PMC: 3736323. DOI: 10.1038/nature10392. View

5.
Frank C, Werber D, Cramer J, Askar M, Faber M, An der Heiden M . Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany. N Engl J Med. 2011; 365(19):1771-80. DOI: 10.1056/NEJMoa1106483. View