» Articles » PMID: 21757428

Linkage and Association of Phospholipid Transfer Protein Activity to LASS4

Overview
Journal J Lipid Res
Publisher Elsevier
Specialty Biochemistry
Date 2011 Jul 16
PMID 21757428
Citations 13
Authors
Affiliations
Soon will be listed here.
Abstract

Phospholipid transfer protein activity (PLTPa) is associated with insulin levels and has been implicated in atherosclerotic disease in both mice and humans. Variation at the PLTP structural locus on chromosome 20 explains some, but not all, heritable variation in PLTPa. In order to detect quantitative trait loci (QTLs) elsewhere in the genome that affect PLTPa, we performed both oligogenic and single QTL linkage analysis on four large families (n = 227 with phenotype, n = 330 with genotype, n = 462 total), ascertained for familial combined hyperlipidemia. We detected evidence of linkage between PLTPa and chromosome 19p (lod = 3.2) for a single family and chromosome 2q (lod = 2.8) for all families. Inclusion of additional marker and exome sequence data in the analysis refined the linkage signal on chromosome 19 and implicated coding variation in LASS4, a gene regulated by leptin that is involved in ceramide synthesis. Association between PLTPa and LASS4 variation was replicated in the other three families (P = 0.02), adjusting for pedigree structure. To our knowledge, this is the first example for which exome data was used in families to identify a complex QTL that is not the structural locus.

Citing Articles

A Dansyl-Modified Sphingosine Kinase Inhibitor DPF-543 Enhanced De Novo Ceramide Generation.

Shamshiddinova M, Gulyamov S, Kim H, Jung S, Baek D, Lee Y Int J Mol Sci. 2021; 22(17).

PMID: 34502095 PMC: 8431253. DOI: 10.3390/ijms22179190.


Combination of Antimicrobial Starters for Feed Fermentation: Influence on Piglet Feces Microbiota and Health and Growth Performance, Including Mycotoxin Biotransformation .

Vadopalas L, Ruzauskas M, Lele V, Starkute V, Zavistanaviciute P, Zokaityte E Front Vet Sci. 2020; 7:528990.

PMID: 33178725 PMC: 7596189. DOI: 10.3389/fvets.2020.528990.


A genome-wide linkage study of autism spectrum disorder and the broad autism phenotype in extended pedigrees.

Woodbury-Smith M, Paterson A, OConnor I, Zarrei M, Yuen R, Howe J J Neurodev Disord. 2018; 10(1):20.

PMID: 29890955 PMC: 5996536. DOI: 10.1186/s11689-018-9238-9.


PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers.

Nato Jr A, Chapman N, Sohi H, Nguyen H, Brkanac Z, Wijsman E Bioinformatics. 2015; 31(23):3790-8.

PMID: 26231429 PMC: 4668752. DOI: 10.1093/bioinformatics/btv444.


Next-generation gene discovery for variants of large impact on lipid traits.

Rosenthal E, Blue E, Jarvik G Curr Opin Lipidol. 2015; 26(2):114-9.

PMID: 25636063 PMC: 4388051. DOI: 10.1097/MOL.0000000000000156.


References
1.
Boerwinkle E, Chakraborty R, Sing C . The use of measured genotype information in the analysis of quantitative phenotypes in man. I. Models and analytical methods. Ann Hum Genet. 1986; 50(2):181-94. DOI: 10.1111/j.1469-1809.1986.tb01037.x. View

2.
Riemens S, van Tol A, Stulp B, Dullaart R . Influence of insulin sensitivity and the TaqIB cholesteryl ester transfer protein gene polymorphism on plasma lecithin:cholesterol acyltransferase and lipid transfer protein activities and their response to hyperinsulinemia in non-diabetic men. J Lipid Res. 1999; 40(8):1467-74. View

3.
Greenberg D, Abreu P, Hodge S . The power to detect linkage in complex disease by means of simple LOD-score analyses. Am J Hum Genet. 1998; 63(3):870-9. PMC: 1377386. DOI: 10.1086/301997. View

4.
Heath S . Markov chain Monte Carlo segregation and linkage analysis for oligogenic models. Am J Hum Genet. 1997; 61(3):748-60. PMC: 1715966. DOI: 10.1086/515506. View

5.
Clerget-Darpoux F, Bonaiti-Pellie C, Hochez J . Effects of misspecifying genetic parameters in lod score analysis. Biometrics. 1986; 42(2):393-9. View