Microbial Communities As Experimental Units
Overview
Reproductive Medicine
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Artificial ecosystem selection is an experimental technique that treats microbial communities as though they were discrete units by applying selection on community-level properties. Highly diverse microbial communities associated with humans and other organisms can have significant impacts on the health of the host. It is difficult to find correlations between microbial community composition and community-associated diseases, in part because it may be impossible to define a universal and robust species concept for microbes. Microbial communities are composed of potentially thousands of unique populations that evolved in intimate contact, so it is appropriate in many situations to view the community as the unit of analysis. This perspective is supported by recent discoveries using metagenomics and pangenomics. Artificial ecosystem selection experiments can be costly, but they bring the logical rigor of biological model systems to the emerging field of microbial community analysis.
Hu H, Wang M, Huang Y, Xu Z, Xu P, Nie Y mLife. 2024; 1(4):382-398.
PMID: 38818482 PMC: 10989833. DOI: 10.1002/mlf2.12043.
Yu S, Zhang Y, Zhang Q Front Microbiol. 2023; 14:1257935.
PMID: 37840740 PMC: 10570731. DOI: 10.3389/fmicb.2023.1257935.
The Clash of Microbiomes: From the Food Matrix to the Host Gut.
Kiousi D, Chorianopoulos N, Tassou C, Galanis A Microorganisms. 2022; 10(1).
PMID: 35056566 PMC: 8780850. DOI: 10.3390/microorganisms10010116.
Artificial Selection on Microbiomes To Breed Microbiomes That Confer Salt Tolerance to Plants.
Mueller U, Juenger T, Kardish M, Carlson A, Burns K, Edwards J mSystems. 2021; 6(6):e0112521.
PMID: 34846165 PMC: 8631316. DOI: 10.1128/mSystems.01125-21.
Evolving Interactions and Emergent Functions in Microbial Consortia.
Rodriguez-Verdugo A mSystems. 2021; 6(4):e0077421.
PMID: 34427521 PMC: 8409725. DOI: 10.1128/mSystems.00774-21.