Complete Genome Sequence of Atopobium Parvulum Type Strain (IPP 1246)

Overview

Journal Stand Genomic Sci

Publisher Biomed Central

Specialty Genetics

Date 2011 Feb 10

PMID 21304653

Citations 17

Authors

Alex Copeland

Johannes Sikorski

Alla Lapidus

Matt Nolan

Tijana Glavina Del Rio

Susan Lucas

Feng Chen

Hope Tice

Sam Pitluck

Jan-Fang Cheng

Rudiger Pukall

Olga Chertkov

Thomas Brettin

Cliff Han

Cheryl Kuske

David Bruce

Lynne Goodwin

Natalia Ivanova

Konstantinos Mavromatis

Natalia Mikhailova

Amy Chen

Krishna Palaniappan

Patrick Chain

Manfred Rohde

Markus Goker

Jim Bristow

Jonathan A Eisen

Victor Markowitz

Philip Hugenholtz

Nikos C Kyrpides

Hans-Peter Klenk

John C Detter

Affiliations

Soon will be listed here.

Abstract

Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

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