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PhiC31 Integrase Induces Efficient Site-specific Excision in Zebrafish

Overview
Journal Transgenic Res
Specialty Molecular Biology
Date 2010 Jun 18
PMID 20556509
Citations 16
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Abstract

Site-specific recombinases catalyze recombination between specific targeting sites to delete, insert, invert, or exchange DNA with high fidelity. In addition to the widely used Cre and Flp recombinases, the phiC31 integrase system from Streptomyces phage may also be used for these genetic manipulations in eukaryotic cells. Unlike Cre and Flp, phiC31 recognizes two heterotypic sites, attB and attP, for recombination. While the phiC31 system has been recently applied in mouse and human cell lines and in Drosophila, it has not been demonstrated whether it can also catalyze efficient DNA recombination in zebrafish. Here we show that phiC31 integrase efficiently induces site-specific deletion of episomal targets as well as chromosomal targets in zebrafish embryos. Thus, the phiC31 system can be used in zebrafish for genetic manipulations, expanding the repertoire of available tools for genetic manipulation in this vertebrate model.

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References
1.
Bateman J, Lee A, Wu C . Site-specific transformation of Drosophila via phiC31 integrase-mediated cassette exchange. Genetics. 2006; 173(2):769-77. PMC: 1526508. DOI: 10.1534/genetics.106.056945. View

2.
Xin H, Deng K, Shui B, Qu S, Sun Q, Lee J . Gene trap and gene inversion methods for conditional gene inactivation in the mouse. Nucleic Acids Res. 2005; 33(2):e14. PMC: 548374. DOI: 10.1093/nar/gni016. View

3.
Keravala A, Lee S, Thyagarajan B, Olivares E, Gabrovsky V, Woodard L . Mutational derivatives of PhiC31 integrase with increased efficiency and specificity. Mol Ther. 2008; 17(1):112-20. PMC: 2834998. DOI: 10.1038/mt.2008.241. View

4.
Hans S, Kaslin J, Freudenreich D, Brand M . Temporally-controlled site-specific recombination in zebrafish. PLoS One. 2009; 4(2):e4640. PMC: 2645673. DOI: 10.1371/journal.pone.0004640. View

5.
Langenau D, Feng H, Berghmans S, Kanki J, Kutok J, Look A . Cre/lox-regulated transgenic zebrafish model with conditional myc-induced T cell acute lymphoblastic leukemia. Proc Natl Acad Sci U S A. 2005; 102(17):6068-73. PMC: 1087915. DOI: 10.1073/pnas.0408708102. View