Moreno-Justicia R, Van der Stede T, Stocks B, Laitila J, Seaborne R, Van de Loock A
Nat Commun. 2025; 16(1):1764.
PMID: 39971958
PMC: 11839989.
DOI: 10.1038/s41467-025-56896-6.
Tu J, Yan H, Zhang X, Lin Z
Nucleic Acids Res. 2025; 53(4).
PMID: 39970279
PMC: 11838043.
DOI: 10.1093/nar/gkaf087.
Driouchi A, Bretan M, Davis B, Heckert A, Seeger M, Silva M
Nat Methods. 2025; 22(3):559-568.
PMID: 39966678
PMC: 11903300.
DOI: 10.1038/s41592-025-02594-6.
Ma L, Liu J, Sun W, Zhao C, Yu L
BMC Genomics. 2025; 26(1):132.
PMID: 39934664
PMC: 11817349.
DOI: 10.1186/s12864-025-11319-0.
Lyu J, Chen C
Int J Mol Sci. 2024; 25(23).
PMID: 39684556
PMC: 11640990.
DOI: 10.3390/ijms252312845.
Spherical Manifolds Capture Drug-Induced Changes in Tumor Cell Cycle Behavior.
Wen O, Wolff S, Stallaert W, Li D, Purvis J, Zikry T
Pac Symp Biocomput. 2024; 30:473-487.
PMID: 39670390
PMC: 11687821.
High-throughput single-cell sorting by stimulated Raman-activated cell ejection.
Zhang J, Lin H, Xu J, Zhang M, Ge X, Zhang C
Sci Adv. 2024; 10(50):eadn6373.
PMID: 39661682
PMC: 11633747.
DOI: 10.1126/sciadv.adn6373.
Cell Painting: a decade of discovery and innovation in cellular imaging.
Seal S, Trapotsi M, Spjuth O, Singh S, Carreras-Puigvert J, Greene N
Nat Methods. 2024; 22(2):254-268.
PMID: 39639168
PMC: 11810604.
DOI: 10.1038/s41592-024-02528-8.
Phenomics Demonstrates Cytokines Additive Induction of Epithelial to Mesenchymal Transition.
Boche A, Landras A, Morel M, Kellouche S, Carreiras F, Lambert A
J Cell Physiol. 2024; 240(1):e31491.
PMID: 39565461
PMC: 11747948.
DOI: 10.1002/jcp.31491.
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning.
van Dijk R, Arevalo J, Babadi M, Carpenter A, Singh S
PLoS Comput Biol. 2024; 20(11):e1012547.
PMID: 39527652
PMC: 11611260.
DOI: 10.1371/journal.pcbi.1012547.
Exploring heterogeneous cell population dynamics in different microenvironments by novel analytical strategy based on images.
Huang Y, Zhou Z, Liu T, Tang S, Xin X
NPJ Syst Biol Appl. 2024; 10(1):129.
PMID: 39505883
PMC: 11542073.
DOI: 10.1038/s41540-024-00459-w.
Harnessing Variability Signatures and Biological Noise May Enhance Immunotherapies' Efficacy and Act as Novel Biomarkers for Diagnosing and Monitoring Immune-Associated Disorders.
Sigawi T, Israeli A, Ilan Y
Immunotargets Ther. 2024; 13:525-539.
PMID: 39431244
PMC: 11488351.
DOI: 10.2147/ITT.S477841.
Reconstructing signaling history of single cells with imaging-based molecular recording.
Hao K, Barrett M, Samadi Z, Zarezadeh A, McGrath Y, Askary A
bioRxiv. 2024; .
PMID: 39416000
PMC: 11482953.
DOI: 10.1101/2024.10.11.617908.
Microfluidic-Based Electrical Operation and Measurement Methods in Single-Cell Analysis.
Liu X, Zheng X
Sensors (Basel). 2024; 24(19).
PMID: 39409403
PMC: 11478560.
DOI: 10.3390/s24196359.
Interpretable Fine-Grained Phenotypes of Subcellular Dynamics via Unsupervised Deep Learning.
Wang C, Choi H, Woodbury L, Lee K
Adv Sci (Weinh). 2024; 11(41):e2403547.
PMID: 39239705
PMC: 11538677.
DOI: 10.1002/advs.202403547.
Integrative proteomic and metabolomic elucidation of cardiomyopathy with in vivo and in vitro models and clinical samples.
Hu Y, Zou Y, Qiao L, Lin L
Mol Ther. 2024; 32(10):3288-3312.
PMID: 39233439
PMC: 11489546.
DOI: 10.1016/j.ymthe.2024.08.030.
Advances in Single-Cell Techniques for Linking Phenotypes to Genotypes.
Chen H, Ma Y, Cheng J, Chen Y
Cancer Heterog Plast. 2024; 1(1).
PMID: 39156821
PMC: 11328949.
DOI: 10.47248/chp2401010004.
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning.
van Dijk R, Arevalo J, Babadi M, Carpenter A, Singh S
bioRxiv. 2024; .
PMID: 39131344
PMC: 11312468.
DOI: 10.1101/2023.11.14.567038.
Systematic data analysis pipeline for quantitative morphological cell phenotyping.
Ghanegolmohammadi F, Eslami M, Ohya Y
Comput Struct Biotechnol J. 2024; 23:2949-2962.
PMID: 39104709
PMC: 11298594.
DOI: 10.1016/j.csbj.2024.07.012.
Label-Free Single-Cell Cancer Classification from the Spatial Distribution of Adhesion Contact Kinetics.
Beres B, Dora Kovacs K, Kanyo N, Peter B, Szekacs I, Horvath R
ACS Sens. 2024; 9(11):5815-5827.
PMID: 39082162
PMC: 11590093.
DOI: 10.1021/acssensors.4c01139.