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Transcriptional Gene Silencing Through Epigenetic Changes Mediated by Non-coding RNAs

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Date 2010 Apr 8
PMID 20373265
Citations 46
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Abstract

Chromatin remodeling guided by non-coding RNA (ncRNA) contributes mechanistically to the establishment of chromatin structure and to the maintenance of epigenetic memory. Various ncRNAs have been identified as regulators of chromatin structure and gene expression. The widespread occurrence of antisense transcription in eukaryotes emphasizes the prevalence of gene regulation by natural antisense transcripts. Recently, antisense ncRNAs have been implicated in the silencing of tumor suppressor genes through epigenetic remodeling events. Characterization of the antisense RNAs involved in the development or maintenance of oncogenic states may define ncRNAs as early biomarkers for the emergence of cancer, and could have a significant impact on the development of tools for disease diagnosis and treatment. In this review, current knowledge on the mechanisms of ncRNA-mediated transcriptional gene silencing in humans is discussed, and parallels between the establishment of a silent chromatin state mediated by siRNAs and long antisense ncRNAs are highlighted.

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References
1.
Tachibana M, Sugimoto K, Nozaki M, Ueda J, Ohta T, Ohki M . G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis. Genes Dev. 2002; 16(14):1779-91. PMC: 186403. DOI: 10.1101/gad.989402. View

2.
Morris K, Santoso S, Turner A, Pastori C, Hawkins P . Bidirectional transcription directs both transcriptional gene activation and suppression in human cells. PLoS Genet. 2008; 4(11):e1000258. PMC: 2576438. DOI: 10.1371/journal.pgen.1000258. View

3.
Turner A, de la Cruz J, Morris K . Mobilization-competent Lentiviral Vector-mediated Sustained Transcriptional Modulation of HIV-1 Expression. Mol Ther. 2008; 17(2):360-8. PMC: 2835059. DOI: 10.1038/mt.2008.268. View

4.
Fuks F, Burgers W, Godin N, Kasai M, Kouzarides T . Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription. EMBO J. 2001; 20(10):2536-44. PMC: 125250. DOI: 10.1093/emboj/20.10.2536. View

5.
Savarese F, Flahndorfer K, Jaenisch R, Busslinger M, Wutz A . Hematopoietic precursor cells transiently reestablish permissiveness for X inactivation. Mol Cell Biol. 2006; 26(19):7167-77. PMC: 1592878. DOI: 10.1128/MCB.00810-06. View