» Articles » PMID: 20360683

Splicing-dependent NMD Does Not Require the EJC in Schizosaccharomyces Pombe

Overview
Journal EMBO J
Date 2010 Apr 3
PMID 20360683
Citations 39
Authors
Affiliations
Soon will be listed here.
Abstract

Nonsense-mediated mRNA decay (NMD) is a translation-linked process that destroys mRNAs with premature translation termination codons (PTCs). In mammalian cells, NMD is also linked to pre-mRNA splicing, usually PTCs trigger strong NMD only when positioned upstream of at least one intron. The exon junction complex (EJC) is believed to mediate the link between splicing and NMD in these systems. Here, we report that in Schizosaccharomyces pombe splicing also enhances NMD, but against the EJC model prediction, an intron stimulated NMD regardless of whether it is positioned upstream or downstream of the PTC and EJC components are not required. Still the effect of splicing seems to be direct-we have found that the important NMD determinant is the proximity of an intron to the PTC, not just the occurrence of splicing. On the basis of these results, we propose a new model to explain how splicing could affect NMD.

Citing Articles

Trypanosomes lack a canonical EJC but possess an UPF1 dependent NMD-like pathway.

Gabiatti B, Freire E, Odenwald J, de Freitas Nascimento J, Holetz F, Carrington M PLoS One. 2025; 20(3):e0315659.

PMID: 40053537 PMC: 11888146. DOI: 10.1371/journal.pone.0315659.


Regulatory mechanism of trichothecene biosynthesis in .

Liew M, Nakajima Y, Maeda K, Kitamura N, Kimura M Front Microbiol. 2023; 14:1148771.

PMID: 37138602 PMC: 10149712. DOI: 10.3389/fmicb.2023.1148771.


Molecular Interaction of Nonsense-Mediated mRNA Decay with Viruses.

Ahmed M, Du Z Viruses. 2023; 15(4).

PMID: 37112798 PMC: 10141005. DOI: 10.3390/v15040816.


Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe.

De S, Edwards D, Dwivedi V, Wang J, Varsally W, Dixon H Nucleic Acids Res. 2021; 50(1):350-367.

PMID: 34928380 PMC: 8754637. DOI: 10.1093/nar/gkab1249.


From Yeast to Mammals, the Nonsense-Mediated mRNA Decay as a Master Regulator of Long Non-Coding RNAs Functional Trajectory.

Andjus S, Morillon A, Wery M Noncoding RNA. 2021; 7(3).

PMID: 34449682 PMC: 8395947. DOI: 10.3390/ncrna7030044.


References
1.
Bahler J, Wu J, Longtine M, Shah N, McKenzie 3rd A, Steever A . Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast. 1998; 14(10):943-51. DOI: 10.1002/(SICI)1097-0061(199807)14:10<943::AID-YEA292>3.0.CO;2-Y. View

2.
Azzalin C, Lingner J . The human RNA surveillance factor UPF1 is required for S phase progression and genome stability. Curr Biol. 2006; 16(4):433-9. DOI: 10.1016/j.cub.2006.01.018. View

3.
Le Hir H, Moore M, Maquat L . Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions. Genes Dev. 2000; 14(9):1098-108. PMC: 316578. View

4.
Kerenyi Z, Merai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C . Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J. 2008; 27(11):1585-95. PMC: 2426726. DOI: 10.1038/emboj.2008.88. View

5.
Proudfoot N, Furger A, Dye M . Integrating mRNA processing with transcription. Cell. 2002; 108(4):501-12. DOI: 10.1016/s0092-8674(02)00617-7. View