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Insights into the Reaction of Protein-tyrosine Phosphatase 1B: Crystal Structures for Transition State Analogs of Both Catalytic Steps

Overview
Journal J Biol Chem
Specialty Biochemistry
Date 2010 Mar 19
PMID 20236928
Citations 62
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Abstract

Catalysis by protein-tyrosine phosphatase 1B (PTP1B) occurs through a two-step mechanism involving a phosphocysteine intermediate. We have solved crystal structures for the transition state analogs for both steps. Together with previously reported crystal structures of apo-PTP1B, the Michaelis complex of an inactive mutant, the phosphoenzyme intermediate, and the product complex, a full picture of all catalytic steps can now be depicted. The transition state analog for the first catalytic step comprises a ternary complex between the catalytic cysteine of PTP1B, vanadate, and the peptide DADEYL, a fragment of a physiological substrate. The equatorial vanadate oxygen atoms bind to the P-loop, and the apical positions are occupied by the peptide tyrosine oxygen and by the PTP1B cysteine sulfur atom. The vanadate assumes a trigonal bipyramidal geometry in both transition state analog structures, with very similar apical O-O distances, denoting similar transition states for both phosphoryl transfer steps. Detailed interactions between the flanking peptide and the enzyme are discussed.

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References
1.
Zhang Y, Hollfelder F, Gordon S, Chen L, Keng Y, Wu L . Impaired transition state complementarity in the hydrolysis of O-arylphosphorothioates by protein-tyrosine phosphatases. Biochemistry. 1999; 38(37):12111-23. DOI: 10.1021/bi990836i. View

2.
Davis I, Leaver-Fay A, Chen V, Block J, Kapral G, Wang X . MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 2007; 35(Web Server issue):W375-83. PMC: 1933162. DOI: 10.1093/nar/gkm216. View

3.
Hengge A . Isotope effects in the study of phosphoryl and sulfuryl transfer reactions. Acc Chem Res. 2002; 35(2):105-12. DOI: 10.1021/ar000143q. View

4.
Zalatan J, Catrina I, Mitchell R, Grzyska P, OBrien P, Herschlag D . Kinetic isotope effects for alkaline phosphatase reactions: implications for the role of active-site metal ions in catalysis. J Am Chem Soc. 2007; 129(31):9789-98. PMC: 3171187. DOI: 10.1021/ja072196+. View

5.
Schubert H, Fauman E, Stuckey J, Dixon J, Saper M . A ligand-induced conformational change in the Yersinia protein tyrosine phosphatase. Protein Sci. 1995; 4(9):1904-13. PMC: 2143214. DOI: 10.1002/pro.5560040924. View