» Articles » PMID: 20150964

Synthetic Biology: Tools to Design, Build, and Optimize Cellular Processes

Overview
Specialty Biology
Date 2010 Feb 13
PMID 20150964
Citations 22
Authors
Affiliations
Soon will be listed here.
Abstract

The general central dogma frames the emergent properties of life, which make biology both necessary and difficult to engineer. In a process engineering paradigm, each biological process stream and process unit is heavily influenced by regulatory interactions and interactions with the surrounding environment. Synthetic biology is developing the tools and methods that will increase control over these interactions, eventually resulting in an integrative synthetic biology that will allow ground-up cellular optimization. In this review, we attempt to contextualize the areas of synthetic biology into three tiers: (1) the process units and associated streams of the central dogma, (2) the intrinsic regulatory mechanisms, and (3) the extrinsic physical and chemical environment. Efforts at each of these three tiers attempt to control cellular systems and take advantage of emerging tools and approaches. Ultimately, it will be possible to integrate these approaches and realize the vision of integrative synthetic biology when cells are completely rewired for biotechnological goals. This review will highlight progress towards this goal as well as areas requiring further research.

Citing Articles

Exploring Antibiotic Resistance in Diverse Homologs of the Dihydrofolate Reductase Protein Family through Broad Mutational Scanning.

Romanowicz K, Resnick C, Hinton S, Plesa C bioRxiv. 2025; .

PMID: 39896582 PMC: 11785229. DOI: 10.1101/2025.01.23.634126.


Microbial production of 5--jinkoheremol, a plant-derived antifungal sesquiterpene.

Wang G, Wu Z, Li M, Liang X, Wen Y, Zheng Q Appl Environ Microbiol. 2024; 90(10):e0119124.

PMID: 39283105 PMC: 11497823. DOI: 10.1128/aem.01191-24.


New Trends in Bioremediation Technologies Toward Environment-Friendly Society: A Mini-Review.

Dutta K, Shityakov S, Khalifa I Front Bioeng Biotechnol. 2021; 9:666858.

PMID: 34409018 PMC: 8365754. DOI: 10.3389/fbioe.2021.666858.


A set of synthetic versatile genetic control elements for the efficient expression of genes in Actinobacteria.

Horbal L, Siegl T, Luzhetskyy A Sci Rep. 2018; 8(1):491.

PMID: 29323285 PMC: 5765039. DOI: 10.1038/s41598-017-18846-1.


Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.

Srivastava S, Iyer V, Ghosh T, Lambadi P, Pathania R, Navani N Nucleic Acids Res. 2016; 44(5):2451-61.

PMID: 26837578 PMC: 4797293. DOI: 10.1093/nar/gkw029.


References
1.
Alper H, Stephanopoulos G . Global transcription machinery engineering: a new approach for improving cellular phenotype. Metab Eng. 2007; 9(3):258-67. DOI: 10.1016/j.ymben.2006.12.002. View

2.
Tian J, Gong H, Sheng N, Zhou X, Gulari E, Gao X . Accurate multiplex gene synthesis from programmable DNA microchips. Nature. 2004; 432(7020):1050-4. DOI: 10.1038/nature03151. View

3.
Sims 3rd R, Mandal S, Reinberg D . Recent highlights of RNA-polymerase-II-mediated transcription. Curr Opin Cell Biol. 2004; 16(3):263-71. DOI: 10.1016/j.ceb.2004.04.004. View

4.
Schaffer D, Koerber J, Lim K . Molecular engineering of viral gene delivery vehicles. Annu Rev Biomed Eng. 2008; 10:169-94. PMC: 2683887. DOI: 10.1146/annurev.bioeng.10.061807.160514. View

5.
Yu H, Tyo K, Alper H, Klein-Marcuschamer D, Stephanopoulos G . A high-throughput screen for hyaluronic acid accumulation in recombinant Escherichia coli transformed by libraries of engineered sigma factors. Biotechnol Bioeng. 2008; 101(4):788-96. DOI: 10.1002/bit.21947. View