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Catalytic Role of the Metal Ion in the Metallo-beta-lactamase GOB

Overview
Journal J Biol Chem
Specialty Biochemistry
Date 2009 Dec 17
PMID 20007696
Citations 18
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Abstract

Metallo-beta-lactamases (MbetaLs) stand as one of the main mechanisms of bacterial resistance toward carbapenems. The rational design of an inhibitor for MbetaLs has been limited by an incomplete knowledge of their catalytic mechanism and by the structural diversity of their active sites. Here we show that the MbetaL GOB from Elizabethkingia meningoseptica is active as a monometallic enzyme by using different divalent transition metal ions as surrogates of the native Zn(II) ion. Of the metal derivatives in which Zn(II) is replaced, Co(II) and Cd(II) give rise to the most active enzymes and are shown to occupy the same binding site as the native ion. However, Zn(II) is the only metal ion capable of stabilizing an anionic intermediate that accumulates during nitrocefin hydrolysis, in which the C-N bond has already been cleaved. This finding demonstrates that the catalytic role of the metal ion in GOB is to stabilize the formation of this intermediate prior to nitrogen protonation. This role may be general to all MbetaLs, whereas nucleophile activation by a Zn(II) ion is not a conserved mechanistic feature.

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References
1.
Dal Peraro M, Vila A, Carloni P . Substrate binding to mononuclear metallo-beta-lactamase from Bacillus cereus. Proteins. 2004; 54(3):412-23. DOI: 10.1002/prot.10554. View

2.
Hu Z, Periyannan G, Bennett B, Crowder M . Role of the Zn1 and Zn2 sites in metallo-beta-lactamase L1. J Am Chem Soc. 2008; 130(43):14207-16. PMC: 2678235. DOI: 10.1021/ja8035916. View

3.
Simona F, Magistrato A, Dal Peraro M, Cavalli A, Vila A, Carloni P . Common mechanistic features among metallo-beta-lactamases: a computational study of Aeromonas hydrophila CphA enzyme. J Biol Chem. 2009; 284(41):28164-28171. PMC: 2788867. DOI: 10.1074/jbc.M109.049502. View

4.
Garau G, Bebrone C, Anne C, Galleni M, Frere J, Dideberg O . A metallo-beta-lactamase enzyme in action: crystal structures of the monozinc carbapenemase CphA and its complex with biapenem. J Mol Biol. 2004; 345(4):785-95. DOI: 10.1016/j.jmb.2004.10.070. View

5.
Nauton L, Kahn R, Garau G, Hernandez J, Dideberg O . Structural insights into the design of inhibitors for the L1 metallo-beta-lactamase from Stenotrophomonas maltophilia. J Mol Biol. 2007; 375(1):257-69. DOI: 10.1016/j.jmb.2007.10.036. View