Protein Structure Prediction Center in CASP8

Overview

Journal Proteins

Date 2009 Sep 2

PMID 19722263

Citations 21

Authors

Andriy Kryshtafovych

Oleh Krysko

Pawel Daniluk

Zinovii Dmytriv

Krzysztof Fidelis

Affiliations

Soon will be listed here.

Abstract

We present an outline of the Critical Assessment of Protein Structure Prediction (CASP) infrastructure implemented at the University of California, Davis, Protein Structure Prediction Center. The infrastructure supports selection and validation of prediction targets, collection of predictions, standard evaluation of submitted predictions, and presentation of results. The Center also supports information exchange relating to CASP experiments and structure prediction in general. Technical aspects of conducting the CASP8 experiment and relevant statistics are also provided.

Citing Articles

Modeling SARS-CoV-2 proteins in the CASP-commons experiment.

Kryshtafovych A, Moult J, Billings W, Della Corte D, Fidelis K, Kwon S Proteins. 2021; 89(12):1987-1996.

PMID: 34462960 PMC: 8616790. DOI: 10.1002/prot.26231.

Epsin and Sla2 form assemblies through phospholipid interfaces.

Garcia-Alai M, Heidemann J, Skruzny M, Gieras A, Mertens H, Svergun D Nat Commun. 2018; 9(1):328.

PMID: 29362354 PMC: 5780493. DOI: 10.1038/s41467-017-02443-x.

Evaluation of the template-based modeling in CASP12.

Kryshtafovych A, Monastyrskyy B, Fidelis K, Moult J, Schwede T, Tramontano A Proteins. 2017; 86 Suppl 1:321-334.

PMID: 29159950 PMC: 5877821. DOI: 10.1002/prot.25425.

MOLS sampling and its applications in structural biophysics.

Ramya L, Nehru Viji S, Arun Prasad P, Kanagasabai V, Gautham N Biophys Rev. 2017; 2(4):169-179.

PMID: 28510038 PMC: 5425679. DOI: 10.1007/s12551-010-0039-y.

Determining protein similarity by comparing hydrophobic core structure.

Gadzala M, Kalinowska B, Banach M, Konieczny L, Roterman I Heliyon. 2017; 3(2):e00235.

PMID: 28217749 PMC: 5300504. DOI: 10.1016/j.heliyon.2017.e00235.

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