Next-generation Sequencing: a Transformative Tool for Vaccinology

Overview

Journal Expert Rev Vaccines

Date 2009 Jul 25

PMID 19627178

Citations 13

Authors

Neelam Dhiman

David I Smith

Gregory A Poland

Affiliations

Soon will be listed here.

Citing Articles

Computational Design of a Chimeric Vaccine against Using Pan-Genome and Reverse Vaccinology.

Mushtaq M, Khan S, Hassan M, Al-Harbi A, Hameed A, Khan K Vaccines (Basel). 2022; 10(11).

PMID: 36366394 PMC: 9697808. DOI: 10.3390/vaccines10111886.

Design of a Multi-Epitopes Based Chimeric Vaccine against Using Pan-Genome and Reverse Vaccinology Approaches.

Al-Megrin W, Karkashan A, Alnuqaydan A, Alkhayl F, Alrumaihi F, Almatroudi A Vaccines (Basel). 2022; 10(6).

PMID: 35746494 PMC: 9227637. DOI: 10.3390/vaccines10060886.

High-throughput Sequencing in Vaccine Research.

Pasik K, Domanska-Blicharz K J Vet Res. 2021; 65(2):131-137.

PMID: 34250296 PMC: 8256470. DOI: 10.2478/jvetres-2021-0029.

Current Trends in Diagnostics of Viral Infections of Unknown Etiology.

Kiselev D, Matsvay A, Abramov I, Dedkov V, Shipulin G, Khafizov K Viruses. 2020; 12(2).

PMID: 32074965 PMC: 7077230. DOI: 10.3390/v12020211.

Role of the Microbiota in the Modulation of Vaccine Immune Responses.

Ciabattini A, Olivieri R, Lazzeri E, Medaglini D Front Microbiol. 2019; 10:1305.

PMID: 31333592 PMC: 6616116. DOI: 10.3389/fmicb.2019.01305.

References

Xie C, Tammi M . CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinformatics. 2009; 10:80. PMC: 2667514. DOI: 10.1186/1471-2105-10-80. View

Clark A . Genome sequences from extinct relatives. Cell. 2008; 134(3):388-9. DOI: 10.1016/j.cell.2008.07.026. View

Minarovits J . Microbe-induced epigenetic alterations in host cells: the coming era of patho-epigenetics of microbial infections. A review. Acta Microbiol Immunol Hung. 2009; 56(1):1-19. DOI: 10.1556/AMicr.56.2009.1.1. View

Gorringe K, Campbell I . Large-scale genomic analysis of ovarian carcinomas. Mol Oncol. 2009; 3(2):157-64. PMC: 5527877. DOI: 10.1016/j.molonc.2008.12.005. View

Guffanti A, Iacono M, Pelucchi P, Kim N, Solda G, Croft L . A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Genomics. 2009; 10:163. PMC: 2678161. DOI: 10.1186/1471-2164-10-163. View

Johnson D, Mortazavi A, Myers R, Wold B . Genome-wide mapping of in vivo protein-DNA interactions. Science. 2007; 316(5830):1497-502. DOI: 10.1126/science.1141319. View

Sultan M, Schulz M, Richard H, Magen A, Klingenhoff A, Scherf M . A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science. 2008; 321(5891):956-60. DOI: 10.1126/science.1160342. View

Berezikov E, Cuppen E, Plasterk R . Approaches to microRNA discovery. Nat Genet. 2006; 38 Suppl:S2-7. DOI: 10.1038/ng1794. View

Wegner K . Massive parallel MHC genotyping: titanium that shines. Mol Ecol. 2009; 18(9):1818-20. DOI: 10.1111/j.1365-294X.2009.04173.x. View

10.

Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer R . Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res. 2007; 17(8):1195-201. PMC: 1933516. DOI: 10.1101/gr.6468307. View

11.

Poland G, Ovsyannikova I, Jacobson R . Personalized vaccines: the emerging field of vaccinomics. Expert Opin Biol Ther. 2008; 8(11):1659-67. PMC: 2831634. DOI: 10.1517/14712598.8.11.1659. View

12.

Keijser B, Zaura E, Huse S, van der Vossen J, Schuren F, Montijn R . Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res. 2008; 87(11):1016-20. DOI: 10.1177/154405910808701104. View

13.

Poland G, Ovsyannikova I, Jacobson R, Smith D . Heterogeneity in vaccine immune response: the role of immunogenetics and the emerging field of vaccinomics. Clin Pharmacol Ther. 2007; 82(6):653-64. DOI: 10.1038/sj.clpt.6100415. View

14.

Ansorge W . Next-generation DNA sequencing techniques. N Biotechnol. 2009; 25(4):195-203. DOI: 10.1016/j.nbt.2008.12.009. View

15.

Poland G, Ovsyannikova I, Jacobson R . Vaccine immunogenetics: bedside to bench to population. Vaccine. 2008; 26(49):6183-8. PMC: 2614670. DOI: 10.1016/j.vaccine.2008.06.057. View

16.

Rozera G, Abbate I, Bruselles A, Vlassi C, DOffizi G, Narciso P . Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations. Retrovirology. 2009; 6:15. PMC: 2660291. DOI: 10.1186/1742-4690-6-15. View

17.

Voelkerding K, Dames S, Durtschi J . Next-generation sequencing: from basic research to diagnostics. Clin Chem. 2009; 55(4):641-58. DOI: 10.1373/clinchem.2008.112789. View

18.

Jacobson R, Ovsyannikova I, Targonski P, Poland G . Studies of twins in vaccinology. Vaccine. 2007; 25(16):3160-4. DOI: 10.1016/j.vaccine.2007.01.048. View

19.

Cloonan N, Forrest A, Kolle G, Gardiner B, Faulkner G, Brown M . Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods. 2008; 5(7):613-9. DOI: 10.1038/nmeth.1223. View

20.

Reif D, McKinney B, Motsinger A, Chanock S, Edwards K, Rock M . Genetic basis for adverse events after smallpox vaccination. J Infect Dis. 2008; 198(1):16-22. PMC: 2746083. DOI: 10.1086/588670. View