Wang Z, Wang D, Wang X, Xu Y, Yuan Y, Chen Y
PLoS One. 2025; 20(2):e0318501.
PMID: 39919065
PMC: 11805447.
DOI: 10.1371/journal.pone.0318501.
Tsui W, Ding S, Jiang P, Lo Y
Genome Res. 2025; 35(1):1-19.
PMID: 39843210
PMC: 11789496.
DOI: 10.1101/gr.278413.123.
Poudel D, Yan G, Miranda C, Kreutz G, Chowdhury I
Front Plant Sci. 2025; 15:1504932.
PMID: 39822960
PMC: 11736665.
DOI: 10.3389/fpls.2024.1504932.
Wen D, Yan R, Zhang L, Zhang H, Chen X, Zhou J
BMC Cancer. 2025; 25(1):71.
PMID: 39806277
PMC: 11727709.
DOI: 10.1186/s12885-025-13439-y.
Zhang X, Li X, Zhang R, Xu H, Zhang J, Xiong Y
Quant Imaging Med Surg. 2024; 14(12):9813-9819.
PMID: 39698666
PMC: 11652017.
DOI: 10.21037/qims-24-242.
Detection of germline CNVs from gene panel data: benchmarking the state of the art.
Munte E, Roca C, Del Valle J, Feliubadalo L, Pineda M, Gel B
Brief Bioinform. 2024; 26(1).
PMID: 39668338
PMC: 11637760.
DOI: 10.1093/bib/bbae645.
DICE: fast and accurate distance-based reconstruction of single-cell copy number phylogenies.
Weiner S, Bansal M
Life Sci Alliance. 2024; 8(3).
PMID: 39667913
PMC: 11638338.
DOI: 10.26508/lsa.202402923.
Early Hints of Metagenome Next-Generation Sequencing and Copy Number Variations Analysis: An Occult Case of Leptomeningeal Metastasis With Rapid Cognitive Decline.
Chen X, Zheng H, Wang T, Feng Z, Wang J, Liu Y
Clin Case Rep. 2024; 12(12):e9676.
PMID: 39624075
PMC: 11609582.
DOI: 10.1002/ccr3.9676.
Reconstructing tumor clonal heterogeneity and evolutionary relationships based on tumor DNA sequencing data.
Wang Z, Fang Y, Wang R, Kong L, Liang S, Tao S
Brief Bioinform. 2024; 25(6).
PMID: 39413797
PMC: 11483135.
DOI: 10.1093/bib/bbae516.
Single-Cell Analysis of Bone-Marrow-Disseminated Tumour Cells.
So K, Su Z, Cheung J, Choi S
Diagnostics (Basel). 2024; 14(19).
PMID: 39410576
PMC: 11475990.
DOI: 10.3390/diagnostics14192172.
A Comparison of Tools That Identify Tumor Cells by Inferring Copy Number Variations from Single-Cell Experiments in Pancreatic Ductal Adenocarcinoma.
Oketch D, Giulietti M, Piva F
Biomedicines. 2024; 12(8).
PMID: 39200223
PMC: 11351975.
DOI: 10.3390/biomedicines12081759.
Uncovering structural variants in Creole cattle from Guadeloupe and their impact on environmental adaptation through whole genome sequencing.
Ben-Jemaa S, Boussaha M, Mandonnet N, Bardou P, Naves M
PLoS One. 2024; 19(8):e0309411.
PMID: 39186744
PMC: 11346954.
DOI: 10.1371/journal.pone.0309411.
Machine learning developed a macrophage signature for predicting prognosis, immune infiltration and immunotherapy features in head and neck squamous cell carcinoma.
Wang Y, Mou Y, Liu W, Wang H, Song X, Yang T
Sci Rep. 2024; 14(1):19538.
PMID: 39174693
PMC: 11341843.
DOI: 10.1038/s41598-024-70430-6.
MSFN: a multi-omics stacked fusion network for breast cancer survival prediction.
Zhang G, Ma C, Yan C, Luo H, Wang J, Liang W
Front Genet. 2024; 15:1378809.
PMID: 39161422
PMC: 11331006.
DOI: 10.3389/fgene.2024.1378809.
Copy number variations contribute to malignant tumor development in children with serious birth defects.
Liu Y, Glessner J, Qu H, Chang X, Qiu H, Wang T
Mol Oncol. 2024; 19(3):899-912.
PMID: 39140252
PMC: 11887664.
DOI: 10.1002/1878-0261.13718.
SCCNAInfer: a robust and accurate tool to infer the absolute copy number on scDNA-seq data.
Zhang L, Zhou X, Mallory X
Bioinformatics. 2024; .
PMID: 39067018
PMC: 11286278.
DOI: 10.1093/bioinformatics/btae454.
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
Duan J, Zhao X, Wu X
Brief Bioinform. 2024; 25(4).
PMID: 38877886
PMC: 11179121.
DOI: 10.1093/bib/bbae277.
Comprehensive evaluation of genes related to basement membrane in hepatocellular carcinoma.
Wu G, Li F, Guo D, Xi K, Zheng D, Huang R
Aging (Albany NY). 2024; 16(11):10108-10131.
PMID: 38870261
PMC: 11210257.
DOI: 10.18632/aging.205923.
Mutational landscape of HSP family on human breast cancer.
Fernandez-Munoz J, Guerrero-Gimenez M, Ciocca L, Germano M, Zoppino F
Sci Rep. 2024; 14(1):12471.
PMID: 38816397
PMC: 11139924.
DOI: 10.1038/s41598-024-61807-8.
Exploring the prognostic significance of arm-level copy number alterations in triple-negative breast cancer.
Dore S, Ali M, Sorin M, McDowell S, Desharnais L, Breton V
Oncogene. 2024; 43(26):2015-2024.
PMID: 38744952
PMC: 11196216.
DOI: 10.1038/s41388-024-03051-y.