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The Small Terminase, Gp16, of Bacteriophage T4 is a Regulator of the DNA Packaging Motor

Overview
Journal J Biol Chem
Specialty Biochemistry
Date 2009 Jun 30
PMID 19561086
Citations 34
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Abstract

Tailed bacteriophages and herpes viruses use powerful molecular motors to translocate DNA into a preassembled prohead and compact the DNA to near crystalline density. The phage T4 motor, a pentamer of 70-kDa large terminase, gp17, is the fastest and most powerful motor reported to date. gp17 has an ATPase activity that powers DNA translocation and a nuclease activity that cuts concatemeric DNA and generates the termini of viral genome. An 18-kDa small terminase, gp16, is also essential, but its role in DNA packaging is poorly understood. gp16 forms oligomers, most likely octamers, exhibits no enzymatic activities, but stimulates the gp17-ATPase activity, and inhibits the nuclease activity. Extensive mutational and biochemical analyses show that gp16 contains three domains, a central oligomerization domain, and N- and C-terminal domains that are essential for ATPase stimulation. Stimulation occurs not by nucleotide exchange or enhanced ATP binding but by triggering hydrolysis of gp17-bound ATP, a mechanism reminiscent of GTPase-activating proteins. gp16 does not have an arginine finger but its interaction with gp17 seems to position a gp17 arginine finger into the catalytic pocket. gp16 inhibits DNA translocation when gp17 is associated with the prohead. gp16 restricts gp17-nuclease such that the putative packaging initiation cut is made but random cutting is inhibited. These results suggest that the phage T4 packaging machine consists of a motor (gp17) and a regulator (gp16). The gp16 regulator is essential to coordinate the gp17 motor ATPase, translocase, and nuclease activities, otherwise it could be suicidal to the virus.

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References
1.
Burroughs A, Iyer L, Aravind L . Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems. Genome Dyn. 2008; 3:48-65. DOI: 10.1159/000107603. View

2.
Catalano C, Cue D, Feiss M . Virus DNA packaging: the strategy used by phage lambda. Mol Microbiol. 1995; 16(6):1075-86. DOI: 10.1111/j.1365-2958.1995.tb02333.x. View

3.
Nemecek D, Lander G, Johnson J, Casjens S, Thomas Jr G . Assembly architecture and DNA binding of the bacteriophage P22 terminase small subunit. J Mol Biol. 2008; 383(3):494-501. PMC: 2577774. DOI: 10.1016/j.jmb.2008.08.050. View

4.
Rice S, Lin A, Safer D, Hart C, Naber N, Carragher B . A structural change in the kinesin motor protein that drives motility. Nature. 2000; 402(6763):778-84. DOI: 10.1038/45483. View

5.
Moffitt J, Chemla Y, Aathavan K, Grimes S, Jardine P, Anderson D . Intersubunit coordination in a homomeric ring ATPase. Nature. 2009; 457(7228):446-50. PMC: 2716090. DOI: 10.1038/nature07637. View