Chawla B, Csankovszki G
DNA (Basel). 2024; 4(1):84-103.
PMID: 39726802
PMC: 11671135.
DOI: 10.3390/dna4010005.
Peter C, Agarwal A, Watanabe R, Kassim B, Wang X, Lambert T
Cell Rep Methods. 2024; 4(12):100911.
PMID: 39631398
PMC: 11704683.
DOI: 10.1016/j.crmeth.2024.100911.
Tan W, Nagabhyrava S, Ang-Olson O, Das P, Ladel L, Sailo B
Curr Issues Mol Biol. 2024; 46(7):6533-6565.
PMID: 39057032
PMC: 11276574.
DOI: 10.3390/cimb46070390.
Hu G, Grover C, Vera D, Lung P, Girimurugan S, Miller E
Mol Biol Evol. 2024; 41(5).
PMID: 38758089
PMC: 11140268.
DOI: 10.1093/molbev/msae095.
Abdelhady H, Aleanizy F, Alqahtani F, Bukhari A, Soliman S, Sau S
Int J Mol Sci. 2024; 25(1).
PMID: 38203711
PMC: 10778996.
DOI: 10.3390/ijms25010542.
Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility.
Back G, Walther D
NAR Genom Bioinform. 2023; 5(4):lqad097.
PMID: 37954573
PMC: 10632188.
DOI: 10.1093/nargab/lqad097.
Different chromatin-scanning modes lead to targeting of compacted chromatin by pioneer factors FOXA1 and SOX2.
Lerner J, Katznelson A, Zhang J, Zaret K
Cell Rep. 2023; 42(7):112748.
PMID: 37405916
PMC: 10529229.
DOI: 10.1016/j.celrep.2023.112748.
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters.
Wooten M, Takushi B, Ahmad K, Henikoff S
Sci Adv. 2023; 9(24):eadg3257.
PMID: 37315134
PMC: 10266722.
DOI: 10.1126/sciadv.adg3257.
Nuclear genome organization in fungi: from gene folding to Rabl chromosomes.
Torres D, Reckard A, Klocko A, Seidl M
FEMS Microbiol Rev. 2023; 47(3).
PMID: 37197899
PMC: 10246852.
DOI: 10.1093/femsre/fuad021.
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters.
Wooten M, Takushi B, Ahmad K, Henikoff S
bioRxiv. 2023; .
PMID: 36712130
PMC: 9882078.
DOI: 10.1101/2023.01.09.523323.
Increased chromatin accessibility facilitates intron retention in specific cell differentiation states.
Petrova V, Song R, Nordstrom K, Walter J, Wong J, Armstrong N
Nucleic Acids Res. 2022; 50(20):11563-11579.
PMID: 36354002
PMC: 9723627.
DOI: 10.1093/nar/gkac994.
ATF7-dependent epigenetic changes induced by high temperature during early porcine embryonic development.
Sun M, Jiang W, Li X, Lee S, Heo G, Zhou D
Cell Prolif. 2022; 56(2):e13352.
PMID: 36254813
PMC: 9890523.
DOI: 10.1111/cpr.13352.
Developmental and housekeeping transcriptional programs in Drosophila require distinct chromatin remodelers.
Hendy O, Serebreni L, Bergauer K, Muerdter F, Huber L, Nemcko F
Mol Cell. 2022; 82(19):3598-3612.e7.
PMID: 36113480
PMC: 7614073.
DOI: 10.1016/j.molcel.2022.08.019.
Tracing the Origin of Cell-Free DNA Molecules through Tissue-Specific Epigenetic Signatures.
Oberhofer A, Bronkhorst A, Uhlig C, Ungerer V, Holdenrieder S
Diagnostics (Basel). 2022; 12(8).
PMID: 36010184
PMC: 9406971.
DOI: 10.3390/diagnostics12081834.
Linking transcriptional silencing with chromatin remodeling, folding, and positioning in the nucleus.
Liu Z, Simmons C, Zhong X
Curr Opin Plant Biol. 2022; 69:102261.
PMID: 35841650
PMC: 10014033.
DOI: 10.1016/j.pbi.2022.102261.
Generating specificity in genome regulation through transcription factor sensitivity to chromatin.
Isbel L, Grand R, Schubeler D
Nat Rev Genet. 2022; 23(12):728-740.
PMID: 35831531
DOI: 10.1038/s41576-022-00512-6.
A hexasome is the preferred substrate for the INO80 chromatin remodeling complex, allowing versatility of function.
Hsieh L, Gourdet M, Moore C, Munoz E, Gamarra N, Ramani V
Mol Cell. 2022; 82(11):2098-2112.e4.
PMID: 35597239
PMC: 9351570.
DOI: 10.1016/j.molcel.2022.04.026.
Galaxy Dnpatterntools for Computational Analysis of Nucleosome Positioning Sequence Patterns.
Pranckeviciene E, Hosid S, Maziukas I, Ioshikhes I
Int J Mol Sci. 2022; 23(9).
PMID: 35563261
PMC: 9102330.
DOI: 10.3390/ijms23094869.
Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq.
Yan B, Tzertzinis G, Schildkraut I, Ettwiller L
Genome Res. 2021; 32(1):162-174.
PMID: 34815308
PMC: 8744680.
DOI: 10.1101/gr.275784.121.
Sentinels of chromatin: chromodomain helicase DNA-binding proteins in development and disease.
Alendar A, Berns A
Genes Dev. 2021; 35(21-22):1403-1430.
PMID: 34725129
PMC: 8559672.
DOI: 10.1101/gad.348897.121.