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Heterotrimeric Coiled Coils with Core Residue Urea Side Chains

Overview
Journal J Org Chem
Specialty Chemistry
Date 2008 Nov 27
PMID 19032043
Citations 2
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Abstract

We report several coiled coil heterotrimers with varying core residue buried polar groups, all with T(m) values >43 degrees C. Introduction of new synthetic side chain structures, including some terminating in monosubstituted ureas, diversifies the pool of viable core residue candidates. A study of core charge pairings demonstrates that, unlike dimeric systems, trimeric coiled coils do not tolerate guanidine-guanidine contacts, even in the presence of a compensating carboxylate. Overall, the roster of feasible coiled coil designs is significantly expanded.

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References
1.
Lee K, Cabello C, Hemmingsen L, Marsh E, Pecoraro V . Using nonnatural amino acids to control metal-coordination number in three-stranded coiled coils. Angew Chem Int Ed Engl. 2006; 45(18):2864-8. DOI: 10.1002/anie.200504548. View

2.
Yoder N, Kumar K . Selective protein-protein interactions driven by a phenylalanine interface. J Am Chem Soc. 2006; 128(1):188-91. DOI: 10.1021/ja055494k. View

3.
Ryan S, Kennan A . Variable stability heterodimeric coiled-coils from manipulation of electrostatic interface residue chain length. J Am Chem Soc. 2007; 129(33):10255-60. DOI: 10.1021/ja073717w. View

4.
Mason J, Schmitz M, Muller K, Arndt K . Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design. Proc Natl Acad Sci U S A. 2006; 103(24):8989-94. PMC: 1482553. DOI: 10.1073/pnas.0509880103. View

5.
Son S, Tanrikulu I, Tirrell D . Stabilization of bzip peptides through incorporation of fluorinated aliphatic residues. Chembiochem. 2006; 7(8):1251-7. DOI: 10.1002/cbic.200500420. View