Alpha 2.0
Login Register
» Articles » PMID: 18841237

DAVID Gene ID Conversion Tool

Overview
Journal Bioinformation
Specialty Biology
Date 2008 Oct 9
PMID 18841237
Citations 94
Authors
Da Wei Huang
Brad T Sherman
Robert Stephens
Michael W Baseler
H Clifford Lane
Richard A Lempicki
Affiliations
Soon will be listed here.
Abstract

Unlabelled: Our current biological knowledge is spread over many independent bioinformatics databases where many different types of gene and protein identifiers are used. The heterogeneous and redundant nature of these identifiers limits data analysis across different bioinformatics resources. It is an even more serious bottleneck of data analysis for larger datasets, such as gene lists derived from microarray and proteomic experiments. The DAVID Gene ID Conversion Tool (DICT), a web-based application, is able to convert user's input gene or gene product identifiers from one type to another in a more comprehensive and high-throughput manner with a uniquely enhanced ID-ID mapping database.

Availability: http://david.abcc.ncifcrf.gov/conversion.jsp.

Citing Articles

DAVID Ortholog: an integrative tool to enhance functional analysis through orthologs.

Sherman B, Panzade G, Imamichi T, Chang W Bioinformatics. 2024; 40(10).

PMID: 39412445 PMC: 11520416. DOI: 10.1093/bioinformatics/btae615.

Exposure to PFAS chemicals induces sex-dependent alterations in key rate-limiting steps of lipid metabolism in liver steatosis.

Hari A, AbdulHameed M, Balik-Meisner M, Mav D, Phadke D, Scholl E Front Toxicol. 2024; 6:1390196.

PMID: 38903859 PMC: 11188372. DOI: 10.3389/ftox.2024.1390196.

Post-ischemic ubiquitination at the postsynaptic density reversibly influences the activity of ischemia-relevant kinases.

Dhawka L, Palfini V, Hambright E, Blanco I, Poon C, Kahl A Commun Biol. 2024; 7(1):321.

PMID: 38480905 PMC: 10937959. DOI: 10.1038/s42003-024-06009-8.

Sleeping Beauty transposon mutagenesis in mouse intestinal organoids identifies genes involved in tumor progression and metastasis.

Iida N, Muranaka Y, Park J, Sekine S, Copeland N, Jenkins N Cancer Gene Ther. 2024; 31(4):527-536.

PMID: 38177308 DOI: 10.1038/s41417-023-00723-x.

Sleeping Beauty transposon mutagenesis identified genes and pathways involved in inflammation-associated colon tumor development.

Shimomura K, Hattori N, Iida N, Muranaka Y, Sato K, Shiraishi Y Nat Commun. 2023; 14(1):6514.

PMID: 37845228 PMC: 10579371. DOI: 10.1038/s41467-023-42228-z.

References
1.
Sherman B, Huang D, Tan Q, Guo Y, Bour S, Liu D . DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics. 2007; 8:426. PMC: 2186358. DOI: 10.1186/1471-2105-8-426. View
2.
Huang D, Sherman B, Tan Q, Kir J, Liu D, Bryant D . DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res. 2007; 35(Web Server issue):W169-75. PMC: 1933169. DOI: 10.1093/nar/gkm415. View
3.
Alibes A, Yankilevich P, Canada A, Diaz-Uriarte R . IDconverter and IDClight: conversion and annotation of gene and protein IDs. BMC Bioinformatics. 2007; 8:9. PMC: 1779800. DOI: 10.1186/1471-2105-8-9. View
4.
Draghici S, Sellamuthu S, Khatri P . Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinformatics. 2006; 22(23):2934-9. PMC: 2435247. DOI: 10.1093/bioinformatics/btl372. View
5.
Maglott D, Ostell J, Pruitt K, Tatusova T . Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res. 2004; 33(Database issue):D54-8. PMC: 539985. DOI: 10.1093/nar/gki031. View