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The Chromosomal Distribution of Histone Methylation Marks in Gymnosperms Differs from That of Angiosperms

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Journal Chromosome Res
Date 2008 Aug 6
PMID 18679813
Citations 22
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Abstract

The chromosomal distribution of seven histone methylation marks (H3K4me2, H3K9me1,2,3 and H3K27me1,2,3) was analysed in the gymnosperm species Pinus sylvestris and Picea abies. Similarly to the situation in other investigated eukaryotes, dimethylation of lysine 4 of histone H3 is restricted to euchromatin in gymnosperms. Surprisingly, also H3K9me1-a mark classified as heterochromatin-specific in angiosperms-labels the euchromatin in P. sylvestris and P. abies. The other investigated methylation marks are either equally distributed along the chromosomes, as H3K9me2 and H3K27me1 (in both species) and H3K9me3 (in P. abies), or enriched at specific types of heterochromatin, as H3K9me3 (in P. sylvestris) and H3K27me2 and H3K27me3 in both species. Although the methylation marks themselves are apparently conserved, their functional specificity within the frame of the 'epigenetic code' might have diverged during evolution.

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References
1.
Kamm A, Doudrick R, Heslop-Harrison J, Schmidt T . The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms. Proc Natl Acad Sci U S A. 1996; 93(7):2708-13. PMC: 39695. DOI: 10.1073/pnas.93.7.2708. View

2.
Tariq M, Saze H, Probst A, Lichota J, Habu Y, Paszkowski J . Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin. Proc Natl Acad Sci U S A. 2003; 100(15):8823-7. PMC: 166397. DOI: 10.1073/pnas.1432939100. View

3.
Ebert A, Schotta G, Lein S, Kubicek S, Krauss V, Jenuwein T . Su(var) genes regulate the balance between euchromatin and heterochromatin in Drosophila. Genes Dev. 2004; 18(23):2973-83. PMC: 534657. DOI: 10.1101/gad.323004. View

4.
Lachner M, Sengupta R, Schotta G, Jenuwein T . Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome. Cold Spring Harb Symp Quant Biol. 2005; 69:209-18. DOI: 10.1101/sqb.2004.69.209. View

5.
Rice J, Briggs S, Ueberheide B, Barber C, Shabanowitz J, Hunt D . Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains. Mol Cell. 2003; 12(6):1591-8. DOI: 10.1016/s1097-2765(03)00479-9. View