» Articles » PMID: 18292239

Nuclear Receptor Location Analyses in Mammalian Genomes: from Gene Regulation to Regulatory Networks

Overview
Journal Mol Endocrinol
Date 2008 Feb 23
PMID 18292239
Citations 23
Authors
Affiliations
Soon will be listed here.
Abstract

Rapid progress in mapping nuclear receptor binding sites, referred to as "location analysis," has recently been achieved through the use of chromatin immunoprecipitation approaches. Location analysis can be performed on a single locus or cover a complete genome, and the resulting datasets can be probed to identify direct target genes and/or investigate the molecular mechanisms by which nuclear receptors control gene expression. In addition, when coupled with other genetic and functional genomics investigative methods, location analysis has proven to be a powerful tool with which to identify novel biological functions of nuclear receptors and build transcriptional regulatory networks. Thus, the knowledge gained from several recent chromatin immunoprecipitation-based studies has challenged basic concepts of nuclear receptor action, offered new insights into gene-regulatory mechanisms, and led to the identification of nuclear receptor-controlled biological functions.

Citing Articles

Androgen Receptor-Mediated Transcription in Prostate Cancer.

Ozturan D, Morova T, Lack N Cells. 2022; 11(5).

PMID: 35269520 PMC: 8909478. DOI: 10.3390/cells11050898.


-regulatory elements in conserved non-coding sequences of nuclear receptor genes indicate for crosstalk between endocrine systems.

Cruz M, Lund D, Szekeres F, Karlsson S, Faresjo M, Larsson D Open Med (Wars). 2021; 16(1):640-650.

PMID: 33954257 PMC: 8051167. DOI: 10.1515/med-2021-0264.


Orphan Nuclear Receptor ERRγ Is a Novel Transcriptional Regulator of IL-6 Mediated Hepatic BMP6 Gene Expression in Mice.

Radhakrishnan K, Kim Y, Jung Y, Kim J, Kim D, Cho S Int J Mol Sci. 2020; 21(19).

PMID: 32998264 PMC: 7582774. DOI: 10.3390/ijms21197148.


ERRα as a Bridge Between Transcription and Function: Role in Liver Metabolism and Disease.

Xia H, Dufour C, Giguere V Front Endocrinol (Lausanne). 2019; 10:206.

PMID: 31024446 PMC: 6459935. DOI: 10.3389/fendo.2019.00206.


Key regulator of cellular metabolism, estrogen-related receptor α, a new therapeutic target in endocrine-related gynecological tumor.

Liu G, Sun P, Dong B, Sehouli J Cancer Manag Res. 2018; 10:6887-6895.

PMID: 30588094 PMC: 6296681. DOI: 10.2147/CMAR.S182466.


References
1.
Lin C, Strom A, Vega V, Kong S, Yeo A, Thomsen J . Discovery of estrogen receptor alpha target genes and response elements in breast tumor cells. Genome Biol. 2004; 5(9):R66. PMC: 522873. DOI: 10.1186/gb-2004-5-9-r66. View

2.
Huss J, Imahashi K, Dufour C, Weinheimer C, Courtois M, Kovacs A . The nuclear receptor ERRalpha is required for the bioenergetic and functional adaptation to cardiac pressure overload. Cell Metab. 2007; 6(1):25-37. DOI: 10.1016/j.cmet.2007.06.005. View

3.
Laganiere J, Deblois G, Lefebvre C, Bataille A, Robert F, Giguere V . From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response. Proc Natl Acad Sci U S A. 2005; 102(33):11651-6. PMC: 1183449. DOI: 10.1073/pnas.0505575102. View

4.
Sandelin A, Carninci P, Lenhard B, Ponjavic J, Hayashizaki Y, Hume D . Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nat Rev Genet. 2007; 8(6):424-36. DOI: 10.1038/nrg2026. View

5.
Laganiere J, Deblois G, Giguere V . Functional genomics identifies a mechanism for estrogen activation of the retinoic acid receptor alpha1 gene in breast cancer cells. Mol Endocrinol. 2005; 19(6):1584-92. DOI: 10.1210/me.2005-0040. View