» Articles » PMID: 18093926

A Synthetic Host-guest System Achieves Avidin-biotin Affinity by Overcoming Enthalpy-entropy Compensation

Overview
Specialty Science
Date 2007 Dec 21
PMID 18093926
Citations 105
Authors
Affiliations
Soon will be listed here.
Abstract

The molecular host cucurbit[7]uril forms an extremely stable inclusion complex with the dicationic ferrocene derivative bis(trimethylammoniomethyl)ferrocene in aqueous solution. The equilibrium association constant for this host-guest pair is 3 x 10(15) M(-1) (K(d) = 3 x 10(-16) M), equivalent to that exhibited by the avidin-biotin pair. Although purely synthetic systems with larger association constants have been reported, the present one is unique because it does not rely on polyvalency. Instead, it achieves its extreme affinity by overcoming the compensatory enthalpy-entropy relationship usually observed in supramolecular complexes. Its disproportionately low entropic cost is traced to extensive host desolvation and to the rigidity of both the host and the guest.

Citing Articles

Regioselective Dimerization of Methylcyclopentadiene inside Cucurbit[7]uril.

Assaf K, Assaf K, Tehrani F, Quintero G, Hein R, Aliaga M Chemistry. 2024; 31(12):e202403964.

PMID: 39644128 PMC: 11855239. DOI: 10.1002/chem.202403964.


Regulation of microtubule dynamics and function in living cells cucurbit[7]uril host-guest assembly.

Saroha A, Bosco M, Menon S, Kumari P, Maity T, Rana S Chem Sci. 2024; 15(30):11981-11994.

PMID: 39092123 PMC: 11290447. DOI: 10.1039/d4sc00204k.


Reversible Control of Gene Expression by Guest-Modified Adenosines in a Cell-Free System via Host-Guest Interaction.

Okamura H, Yao T, Nagatsugi F J Am Chem Soc. 2024; 146(27):18513-18523.

PMID: 38941287 PMC: 11240562. DOI: 10.1021/jacs.4c04262.


Peptide recognition by a synthetic receptor at subnanomolar concentrations.

Suating P, Ewe M, Kimberly L, Arman H, Wherritt D, Urbach A Chem Sci. 2024; 15(14):5133-5142.

PMID: 38577360 PMC: 10988627. DOI: 10.1039/d4sc01122h.


Overcoming barriers with non-covalent interactions: supramolecular recognition of adamantyl cucurbit[]uril assemblies for medical applications.

Aleskovic M, Sekutor M RSC Med Chem. 2024; 15(2):433-471.

PMID: 38389878 PMC: 10880950. DOI: 10.1039/d3md00596h.


References
1.
Chang C, Chen W, Gilson M . Ligand configurational entropy and protein binding. Proc Natl Acad Sci U S A. 2007; 104(5):1534-9. PMC: 1780070. DOI: 10.1073/pnas.0610494104. View

2.
Chen W, Chang C, Gilson M . Concepts in receptor optimization: targeting the RGD peptide. J Am Chem Soc. 2006; 128(14):4675-84. DOI: 10.1021/ja056600l. View

3.
Chang C, Gilson M . Free energy, entropy, and induced fit in host-guest recognition: calculations with the second-generation mining minima algorithm. J Am Chem Soc. 2004; 126(40):13156-64. DOI: 10.1021/ja047115d. View

4.
Williams D, Stephens E, OBrien D, Zhou M . Understanding noncovalent interactions: ligand binding energy and catalytic efficiency from ligand-induced reductions in motion within receptors and enzymes. Angew Chem Int Ed Engl. 2004; 43(48):6596-616. DOI: 10.1002/anie.200300644. View

5.
Livnah O, Bayer E, Wilchek M, Sussman J . Three-dimensional structures of avidin and the avidin-biotin complex. Proc Natl Acad Sci U S A. 1993; 90(11):5076-80. PMC: 46657. DOI: 10.1073/pnas.90.11.5076. View