» Articles » PMID: 18087701

Stability of the T-DNA Flanking Regions in Transgenic Arabidopsis Thaliana Plants Under Influence of Abiotic Stress and Cultivation Practices

Overview
Journal Plant Cell Rep
Publisher Springer
Date 2007 Dec 19
PMID 18087701
Citations 3
Authors
Affiliations
Soon will be listed here.
Abstract

Genetic transformation is often associated with different rearrangements of the plant genome at the site of insertion. Therefore the question remains weather these T-DNA insertion sites are more prone to genotoxic stresses. Here, we studied the impact of propagation through generations, the influence of gene stacking and of photo oxidative stress caused by high light intensity on the stability of the transgene flanking regions in the model plant Arabidopsis thaliana. Conformational Sensitive Capillary Electrophoresis (CSCE), RFLP and sequencing were deployed in this analysis in order to study the proximal 100 bp and the long-range T-DNA flanking sequences. By screening seven transgenic lines no evidence for occurrence of mutation events were found, implying that the nucleotide sequence of the T-DNA flanking regions of the studied events is unlikely to be unstable.

Citing Articles

Whole-genome resequencing using next-generation and Nanopore sequencing for molecular characterization of T-DNA integration in transgenic poplar 741.

Chen X, Dong Y, Huang Y, Fan J, Yang M, Zhang J BMC Genomics. 2021; 22(1):329.

PMID: 33957867 PMC: 8101135. DOI: 10.1186/s12864-021-07625-y.


Targeted Next Generation Sequencing to study insert stability in genetically modified plants.

Boutigny A, Barranger A, de Boisseson C, Blanchard Y, Rolland M Sci Rep. 2019; 9(1):2308.

PMID: 30783176 PMC: 6381221. DOI: 10.1038/s41598-019-38701-9.


Editor's choice: Crop genome plasticity and its relevance to food and feed safety of genetically engineered breeding stacks.

Weber N, Halpin C, Hannah L, Jez J, Kough J, Parrott W Plant Physiol. 2012; 160(4):1842-53.

PMID: 23060369 PMC: 3510115. DOI: 10.1104/pp.112.204271.

References
1.
Windels P, De Buck S, Van Bockstaele E, Loose M, Depicker A . T-DNA integration in Arabidopsis chromosomes. Presence and origin of filler DNA sequences. Plant Physiol. 2003; 133(4):2061-8. PMC: 300757. DOI: 10.1104/pp.103.027532. View

2.
Kovalchuk I, Kovalchuk O, Hohn B . Genome-wide variation of the somatic mutation frequency in transgenic plants. EMBO J. 2000; 19(17):4431-8. PMC: 302052. DOI: 10.1093/emboj/19.17.4431. View

3.
Nacry P, Camilleri C, Courtial B, Caboche M, Bouchez D . Major chromosomal rearrangements induced by T-DNA transformation in Arabidopsis. Genetics. 1998; 149(2):641-50. PMC: 1460160. DOI: 10.1093/genetics/149.2.641. View

4.
Forsbach A, Schubert D, Lechtenberg B, Gils M, Schmidt R . A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome. Plant Mol Biol. 2003; 52(1):161-76. DOI: 10.1023/a:1023929630687. View

5.
Kumar S, Fladung M . Transgene integration in aspen: structures of integration sites and mechanism of T-DNA integration. Plant J. 2002; 31(4):543-51. DOI: 10.1046/j.1365-313x.2002.01368.x. View