Solid-state Protein-structure Determination with Proton-detected Triple-resonance 3D Magic-angle-spinning NMR Spectroscopy

Overview

Journal Angew Chem Int Ed Engl

Specialty Chemistry

Date 2007 Oct 2

PMID 17907259

Citations 97

Authors

Donghua H Zhou

John J Shea

Andrew J Nieuwkoop

W Trent Franks

Benjamin J Wylie

Charles Mullen

Dennis Sandoz

Chad M Rienstra

Affiliations

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References

Fossi M, Castellani F, Nilges M, Oschkinat H, van Rossum B . SOLARIA: a protocol for automated cross-peak assignment and structure calculation for solid-state magic-angle spinning NMR spectroscopy. Angew Chem Int Ed Engl. 2005; 44(38):6151-4. DOI: 10.1002/anie.200501884. View

Morcombe C, Zilm K . Chemical shift referencing in MAS solid state NMR. J Magn Reson. 2003; 162(2):479-86. DOI: 10.1016/s1090-7807(03)00082-x. View

Cornilescu G, Delaglio F, Bax A . Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR. 1999; 13(3):289-302. DOI: 10.1023/a:1008392405740. View

Reif B, van Rossum B, Castellani F, Rehbein K, Diehl A, Oschkinat H . Characterization of (1)H-(1)H distances in a uniformly (2)H,(15)N-labeled SH3 domain by MAS solid-state NMR spectroscopy (section sign). J Am Chem Soc. 2003; 125(6):1488-9. DOI: 10.1021/ja0283697. View

Delaglio F, Grzesiek S, Vuister G, Zhu G, Pfeifer J, Bax A . NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR. 1995; 6(3):277-93. DOI: 10.1007/BF00197809. View

Castellani F, van Rossum B, Diehl A, Schubert M, Rehbein K, Oschkinat H . Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy. Nature. 2002; 420(6911):98-102. DOI: 10.1038/nature01070. View

Paulson E, Morcombe C, Gaponenko V, Dancheck B, Byrd R, Zilm K . High-sensitivity observation of dipolar exchange and NOEs between exchangeable protons in proteins by 3D solid-state NMR spectroscopy. J Am Chem Soc. 2003; 125(47):14222-3. DOI: 10.1021/ja037559u. View

Franks W, Zhou D, Wylie B, Money B, Graesser D, Frericks H . Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis. J Am Chem Soc. 2005; 127(35):12291-305. DOI: 10.1021/ja044497e. View

Chevelkov V, Rehbein K, Diehl A, Reif B . Ultrahigh resolution in proton solid-state NMR spectroscopy at high levels of deuteration. Angew Chem Int Ed Engl. 2006; 45(23):3878-81. DOI: 10.1002/anie.200600328. View

10.

Giraud N, Sein J, Pintacuda G, Bockmann A, Lesage A, Blackledge M . Observation of heteronuclear overhauser effects confirms the 15N-1H dipolar relaxation mechanism in a crystalline protein. J Am Chem Soc. 2006; 128(38):12398-9. DOI: 10.1021/ja064037g. View

11.

Rosen M, Gardner K, Willis R, Parris W, Pawson T, Kay L . Selective methyl group protonation of perdeuterated proteins. J Mol Biol. 1996; 263(5):627-36. DOI: 10.1006/jmbi.1996.0603. View

12.

Reif B, Griffin R . 1H detected 1H,15N correlation spectroscopy in rotating solids. J Magn Reson. 2003; 160(1):78-83. DOI: 10.1016/s1090-7807(02)00035-6. View

13.

Chevelkov V, van Rossum B, Castellani F, Rehbein K, Diehl A, Hohwy M . 1H detection in MAS solid-state NMR spectroscopy of biomacromolecules employing pulsed field gradients for residual solvent suppression. J Am Chem Soc. 2003; 125(26):7788-9. DOI: 10.1021/ja029354b. View

14.

Reif B, Jaroniec C, Rienstra C, Hohwy M, Griffin R . 1H-1H MAS correlation spectroscopy and distance measurements in a deuterated peptide. J Magn Reson. 2001; 151(2):320-7. DOI: 10.1006/jmre.2001.2354. View

15.

Stringer J, Bronnimann C, Mullen C, Zhou D, Stellfox S, Li Y . Reduction of RF-induced sample heating with a scroll coil resonator structure for solid-state NMR probes. J Magn Reson. 2005; 173(1):40-8. DOI: 10.1016/j.jmr.2004.11.015. View

16.

Zhou D, Shah G, Cormos M, Mullen C, Sandoz D, Rienstra C . Proton-detected solid-state NMR spectroscopy of fully protonated proteins at 40 kHz magic-angle spinning. J Am Chem Soc. 2007; 129(38):11791-801. DOI: 10.1021/ja073462m. View

17.

Lange A, Becker S, Seidel K, Giller K, Pongs O, Baldus M . A concept for rapid protein-structure determination by solid-state NMR spectroscopy. Angew Chem Int Ed Engl. 2005; 44(14):2089-92. DOI: 10.1002/anie.200462516. View

18.

Schwieters C, Kuszewski J, Tjandra N, Clore G . The Xplor-NIH NMR molecular structure determination package. J Magn Reson. 2003; 160(1):65-73. DOI: 10.1016/s1090-7807(02)00014-9. View

19.

Paulson E, Morcombe C, Gaponenko V, Dancheck B, Byrd R, Zilm K . Sensitive high resolution inverse detection NMR spectroscopy of proteins in the solid state. J Am Chem Soc. 2003; 125(51):15831-6. DOI: 10.1021/ja037315+. View

20.

Lesage A, Bockmann A . Water-protein interactions in microcrystalline crh measured by 1H-13C solid-state NMR spectroscopy. J Am Chem Soc. 2003; 125(44):13336-7. DOI: 10.1021/ja036720y. View