Guha M, Singh A, Butzin N
Commun Biol. 2025; 8(1):206.
PMID: 39922941
PMC: 11807137.
DOI: 10.1038/s42003-025-07639-2.
Bhalerao R
Quant Plant Biol. 2025; 5():e10.
PMID: 39777031
PMC: 11706686.
DOI: 10.1017/qpb.2024.10.
Ramirez Sierra M, Sokolowski T
PLoS Comput Biol. 2024; 20(11):e1012473.
PMID: 39541410
PMC: 11614244.
DOI: 10.1371/journal.pcbi.1012473.
Mellis I, Melzer M, Bodkin N, Goyal Y
Genome Biol. 2024; 25(1):217.
PMID: 39135102
PMC: 11320884.
DOI: 10.1186/s13059-024-03351-2.
Zhang Z, Zabaikina I, Nieto C, Vahdat Z, Bokes P, Singh A
bioRxiv. 2024; .
PMID: 38979195
PMC: 11230457.
DOI: 10.1101/2024.06.28.601263.
Gram-positive bacteria are primed for surviving lethal doses of antibiotics and chemical stress.
Guha M, Singh A, Butzin N
bioRxiv. 2024; .
PMID: 38895422
PMC: 11185512.
DOI: 10.1101/2024.05.28.596288.
Single-cell heterogeneity in ribosome content and the consequences for the growth laws.
Brettner L, Geiler-Samerotte K
bioRxiv. 2024; .
PMID: 38895328
PMC: 11185559.
DOI: 10.1101/2024.04.19.590370.
Research advances in the identification of regulatory mechanisms of surfactin production by Bacillus: a review.
Qiao J, Borriss R, Sun K, Zhang R, Chen X, Liu Y
Microb Cell Fact. 2024; 23(1):100.
PMID: 38566071
PMC: 10988940.
DOI: 10.1186/s12934-024-02372-7.
miRNA circuit modules for precise, tunable control of gene expression.
Du R, Flynn M, Honsa M, Jungmann R, Elowitz M
bioRxiv. 2024; .
PMID: 38559239
PMC: 10979901.
DOI: 10.1101/2024.03.12.583048.
Emerging tools for uncovering genetic and transcriptomic heterogeneities in bacteria.
Liao Y
Biophys Rev. 2024; 16(1):109-124.
PMID: 38495445
PMC: 10937887.
DOI: 10.1007/s12551-023-01178-y.
A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization.
Monnier L, Cournede P
PLoS Comput Biol. 2024; 20(2):e1011880.
PMID: 38386700
PMC: 10914288.
DOI: 10.1371/journal.pcbi.1011880.
A computational model of stem cells' internal mechanism to recapitulate spatial patterning and maintain the self-organized pattern in the homeostasis state.
Khorasani N, Sadeghi M
Sci Rep. 2024; 14(1):1528.
PMID: 38233402
PMC: 10794714.
DOI: 10.1038/s41598-024-51386-z.
Single-cell stable isotope probing in microbial ecology.
Alcolombri U, Pioli R, Stocker R, Berry D
ISME Commun. 2023; 2(1):55.
PMID: 37938753
PMC: 9723680.
DOI: 10.1038/s43705-022-00142-3.
Effects of microRNA-mediated negative feedback on gene expression noise.
Adhikary R, Roy A, Jolly M, Das D
Biophys J. 2023; 122(21):4220-4240.
PMID: 37803829
PMC: 10645566.
DOI: 10.1016/j.bpj.2023.09.019.
Transcriptional Stochasticity as a Key Aspect of HIV-1 Latency.
Damour A, Slaninova V, Radulescu O, Bertrand E, Basyuk E
Viruses. 2023; 15(9).
PMID: 37766375
PMC: 10535884.
DOI: 10.3390/v15091969.
Bacterial single-cell transcriptomics: Recent technical advances and future applications in dentistry.
Moon J, Roh D, Kwack K, Lee J
Jpn Dent Sci Rev. 2023; 59:253-262.
PMID: 37674900
PMC: 10477369.
DOI: 10.1016/j.jdsr.2023.08.001.
Prevalence of and gene regulatory constraints on transcriptional adaptation in single cells.
Mellis I, Bodkin N, Melzer M, Goyal Y
bioRxiv. 2023; .
PMID: 37645989
PMC: 10462021.
DOI: 10.1101/2023.08.14.553318.
Theoretical and computational tools to model multistable gene regulatory networks.
Bocci F, Jia D, Nie Q, Jolly M, Onuchic J
Rep Prog Phys. 2023; 86(10).
PMID: 37531952
PMC: 10521208.
DOI: 10.1088/1361-6633/acec88.
Transcriptional bursting: stochasticity in deterministic development.
Porello E, Trudeau R, Lim B
Development. 2023; 150(12).
PMID: 37337971
PMC: 10323239.
DOI: 10.1242/dev.201546.
Understanding spatiotemporal coupling of gene expression using single molecule RNA imaging technologies.
Gerber A, van Otterdijk S, Bruggeman F, Tutucci E
Transcription. 2023; 14(3-5):105-126.
PMID: 37050882
PMC: 10807504.
DOI: 10.1080/21541264.2023.2199669.