Summarizing Drug Information in Medline Citations

Overview

Journal AMIA Annu Symp Proc

Specialty Medical Informatics

Date 2007 Jan 24

PMID 17238342

Citations 17

Authors

Marcelo Fiszman

Thomas C Rindflesch

Halil Kilicoglu

Affiliations

Soon will be listed here.

Abstract

Adverse drug events and drug-drug interactions are a major concern in patient care. Although databases exist to provide information about drugs, they are not always up-to-date and complete (particularly regarding pharmacogenetics). We propose a methodology based on automatic summarization to identify drug information in Medline citations and present results to the user in a convenient form. We evaluate the method on a selection of citations discussing ten drugs ranging from the proton pump inhibitor lansoprazole to the vasoconstrictor sumatriptan. We suggest that automatic summarization can provide a valuable adjunct to curated drug databases in supporting quality patient care.

Citing Articles

UMLS users and uses: a current overview.

Amos L, Anderson D, Brody S, Ripple A, Humphreys B J Am Med Inform Assoc. 2020; .

PMID: 32683453 PMC: 7580803. DOI: 10.1093/jamia/ocaa084.

Broad-coverage biomedical relation extraction with SemRep.

Kilicoglu H, Rosemblat G, Fiszman M, Shin D BMC Bioinformatics. 2020; 21(1):188.

PMID: 32410573 PMC: 7222583. DOI: 10.1186/s12859-020-3517-7.

Modified Bidirectional Encoder Representations From Transformers Extractive Summarization Model for Hospital Information Systems Based on Character-Level Tokens (AlphaBERT): Development and Performance Evaluation.

Chen Y, Chen Y, Lin J, Huang C, Lai F JMIR Med Inform. 2020; 8(4):e17787.

PMID: 32347806 PMC: 7221648. DOI: 10.2196/17787.

Identifying Common Methods Used by Drug Interaction Experts for Finding Evidence About Potential Drug-Drug Interactions: Web-Based Survey.

Grizzle A, Horn J, Collins C, Schneider J, Malone D, Stottlemyer B J Med Internet Res. 2019; 21(1):e11182.

PMID: 30609981 PMC: 6682289. DOI: 10.2196/11182.

Text summarization in the biomedical domain: a systematic review of recent research.

Mishra R, Bian J, Fiszman M, Weir C, Jonnalagadda S, Mostafa J J Biomed Inform. 2014; 52:457-67.

PMID: 25016293 PMC: 4261035. DOI: 10.1016/j.jbi.2014.06.009.

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