» Articles » PMID: 16829127

Revising the Proton Affinity Scale of the Naturally Occurring Alpha-amino Acids

Overview
Specialty Chemistry
Date 2006 Jul 11
PMID 16829127
Citations 35
Authors
Affiliations
Soon will be listed here.
Abstract

The proton affinities (PA) of the 20 naturally occurring alpha-amino acids (AA) have been determined computationally by means of density functional theory (DFT) and high-level G2(MP2) calculations. These theoretical PAs, together with data that have appeared since 1997 in the literature, are used to validate the most reasonable currently available PA scale for AAs (Harrison, A. G. Mass Spectrom. Rev. 1997, 16, 201-217.). Significant scatter is observed for the PAs of Ser, Asp, Phe, Asn, Met, Pro, Gln, Glu, Trp, His, Lys, and Arg, many of which have a basic side-chain functionality. Critical review of the available data leads to new consensus PAs for Asn, Gln, Met, and Arg of 222.4, 230.5, 223.7, and 250.2 kcal/mol, respectively.

Citing Articles

Ion/ion Charge Inversion/Attachment in Conjunction with Dipolar DC Collisional Activation as a Selective Screen for Sulfo- and Phosphopeptides.

Shih M, McLuckey S Int J Mass Spectrom. 2023; 444.

PMID: 37064606 PMC: 10104595. DOI: 10.1016/j.ijms.2019.116181.


Benchmark Ab Initio Determination of the Conformers, Proton Affinities, and Gas-Phase Basicities of Cysteine.

Nacsa A, Czako G J Phys Chem A. 2022; 126(51):9667-9679.

PMID: 36524999 PMC: 9806835. DOI: 10.1021/acs.jpca.2c07035.


Vibrational Spectroscopy of Homo- and Heterochiral Amino Acid Dimers: Conformational Landscapes.

Wang H, Heger M, Al-Jabiri M, Xu Y Molecules. 2022; 27(1).

PMID: 35011269 PMC: 8746356. DOI: 10.3390/molecules27010038.


Substituent Effects on the Basicity of Patriscabrin A and Lettucenin A: Evolution Favors the Aromatic?.

Prasad S, Tantillo D ACS Omega. 2021; 6(44):29685-29691.

PMID: 34778640 PMC: 8582057. DOI: 10.1021/acsomega.1c04051.


Gas-Phase Ion/Ion Chemistry for Structurally Sensitive Probes of Gaseous Protein Ion Structure: Electrostatic and Electrostatic to Covalent Cross-Linking.

Cheung See Kit M, Carvalho V, Vilseck J, Webb I Int J Mass Spectrom. 2021; 463.

PMID: 33716558 PMC: 7946065. DOI: 10.1016/j.ijms.2021.116549.


References
1.
Bouchoux G, Salpin J . Gas-phase basicity of glycine, alanine, proline, serine, lysine, histidine and some of their peptides by the thermokinetic method. Eur J Mass Spectrom (Chichester). 2003; 9(4):391-402. DOI: 10.1255/ejms.568. View

2.
Wesdemiotis C . Entropy considerations in kinetic method experiments. J Mass Spectrom. 2004; 39(9):998-1003. DOI: 10.1002/jms.681. View

3.
Mezzache S, Bruneleau N, Vekey K, Afonso C, Karoyan P, Fournier F . Improved proton affinity measurements for proline and modified prolines using triple quadrupole and ion trap mass spectrometers. J Mass Spectrom. 2005; 40(10):1300-8. DOI: 10.1002/jms.905. View

4.
Rak J, Skurski P, Simons J, Gutowski M . Low-energy tautomers and conformers of neutral and protonated arginine. J Am Chem Soc. 2001; 123(47):11695-707. DOI: 10.1021/ja011357l. View

5.
Rakov V, Borisov O, Whitehouse C . Establishing low-energy sequential decomposition pathways of leucine enkephalin and its N- and C-terminus fragments using multiple-resonance CID in quadrupolar ion guide. J Am Soc Mass Spectrom. 2004; 15(12):1794-809. DOI: 10.1016/j.jasms.2004.06.020. View