Giraudo A, Bolchi C, Pallavicini M, Di Santo R, Costi R, Saccoliti F
Pharmaceuticals (Basel). 2025; 18(1).
PMID: 39861091
PMC: 11768348.
DOI: 10.3390/ph18010028.
Wong D, Qiu H
Vascul Pharmacol. 2024; 157():107443.
PMID: 39586415
PMC: 11648470.
DOI: 10.1016/j.vph.2024.107443.
Chen Y, Wang J, Zou Q, Niu M, Ding Y, Song J
BMC Biol. 2024; 22(1):233.
PMID: 39396972
PMC: 11472440.
DOI: 10.1186/s12915-024-02030-9.
Farnoush A, Sedighi-Maman Z, Rasoolian B, Heath J, Fallah B
Sci Rep. 2024; 14(1):23636.
PMID: 39384938
PMC: 11464664.
DOI: 10.1038/s41598-024-74505-2.
Jiko P, Mohammad M, Richi F, Islam M, Alam S, Taher M
J Inflamm Res. 2024; 17:5821-5854.
PMID: 39228677
PMC: 11370890.
DOI: 10.2147/JIR.S470835.
MiRAGE: mining relationships for advanced generative evaluation in drug repositioning.
Hassanali Aragh A, Givehchian P, Moslemi Amirani R, Masumshah R, Eslahchi C
Brief Bioinform. 2024; 25(4).
PMID: 39038932
PMC: 11262809.
DOI: 10.1093/bib/bbae337.
off-target profiling for enhanced drug safety assessment.
Liu J, Gui Y, Rao J, Sun J, Wang G, Ren Q
Acta Pharm Sin B. 2024; 14(7):2927-2941.
PMID: 39027254
PMC: 11252485.
DOI: 10.1016/j.apsb.2024.03.002.
DRGATAN: Directed relation graph attention aware network for asymmetric drug-drug interaction prediction.
Zhang D, Wang Z, Zhao D, Li J
iScience. 2024; 27(6):109943.
PMID: 38868194
PMC: 11167430.
DOI: 10.1016/j.isci.2024.109943.
MASMDDI: multi-layer adaptive soft-mask graph neural network for drug-drug interaction prediction.
Lin J, Hong B, Cai Z, Lu P, Lin K
Front Pharmacol. 2024; 15:1369403.
PMID: 38831885
PMC: 11144894.
DOI: 10.3389/fphar.2024.1369403.
FMCA-DTI: a fragment-oriented method based on a multihead cross attention mechanism to improve drug-target interaction prediction.
Zhang Q, Zuo L, Ren Y, Wang S, Wang W, Ma L
Bioinformatics. 2024; 40(6).
PMID: 38810106
PMC: 11256963.
DOI: 10.1093/bioinformatics/btae347.
HMMF: a hybrid multi-modal fusion framework for predicting drug side effect frequencies.
Liu W, Zhang J, Qiao G, Bian J, Dong B, Li Y
BMC Bioinformatics. 2024; 25(1):196.
PMID: 38769492
PMC: 11555943.
DOI: 10.1186/s12859-024-05806-6.
Strategies to reduce the risks of mRNA drug and vaccine toxicity.
Bitounis D, Jacquinet E, Rogers M, Amiji M
Nat Rev Drug Discov. 2024; 23(4):281-300.
PMID: 38263456
DOI: 10.1038/s41573-023-00859-3.
Predicting drug-protein interactions by preserving the graph information of multi source data.
Wei J, Lu L, Shen T
BMC Bioinformatics. 2024; 25(1):10.
PMID: 38177981
PMC: 10768380.
DOI: 10.1186/s12859-023-05620-6.
Drug-drug interaction prediction: databases, web servers and computational models.
Zhao Y, Yin J, Zhang L, Zhang Y, Chen X
Brief Bioinform. 2023; 25(1).
PMID: 38113076
PMC: 10782925.
DOI: 10.1093/bib/bbad445.
Chemoproteomics, A Broad Avenue to Target Deconvolution.
Gao Y, Ma M, Li W, Lei X
Adv Sci (Weinh). 2023; 11(8):e2305608.
PMID: 38095542
PMC: 10885659.
DOI: 10.1002/advs.202305608.
LCK-SafeScreen-Model: An Advanced Ensemble Machine Learning Approach for Estimating the Binding Affinity between Compounds and LCK Target.
Cheng Y, Ji C, Xu J, Chen R, Guo Y, Bian Q
Molecules. 2023; 28(21).
PMID: 37959801
PMC: 10650606.
DOI: 10.3390/molecules28217382.
CSL-Tox: an open-source analytical framework for the comparison of short-term and long-term toxicity end points and assessing the need of chronic studies in drug development.
Naga D, Dimitrakopoulou S, Roberts S, Husar E, Mohr S, Booler H
Sci Rep. 2023; 13(1):14865.
PMID: 37684321
PMC: 10491674.
DOI: 10.1038/s41598-023-41899-4.
Ocular Pharmacology and Toxicology of TRPV1 Antagonist SAF312 (Libvatrep).
Mogi M, Mendonza A, Chastain J, Demirs J, Medley Q, Zhang Q
Transl Vis Sci Technol. 2023; 12(9):5.
PMID: 37672251
PMC: 10484039.
DOI: 10.1167/tvst.12.9.5.
Pretrained transformer models for predicting the withdrawal of drugs from the market.
Mazuz E, Shtar G, Kutsky N, Rokach L, Shapira B
Bioinformatics. 2023; 39(8).
PMID: 37610328
PMC: 10469107.
DOI: 10.1093/bioinformatics/btad519.
Closing the loop between brain and electrical stimulation: towards precision neuromodulation treatments.
Soleimani G, Nitsche M, Bergmann T, Towhidkhah F, Violante I, Lorenz R
Transl Psychiatry. 2023; 13(1):279.
PMID: 37582922
PMC: 10427701.
DOI: 10.1038/s41398-023-02565-5.