» Articles » PMID: 15923227

DNA Overstretching Transition: Ionic Strength Effects

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 2005 Jun 1
PMID 15923227
Citations 4
Authors
Affiliations
Soon will be listed here.
Abstract

As double-stranded DNA is stretched to its B-form contour length, models of polymer elasticity can describe the dramatic increase in measured force. When the molecule is stretched beyond the contour length, it further shows a highly cooperative overstretching transition. We have developed a theoretical description for this transition by coupling the two-state model and the elasticity theory proposed earlier by others. Furthermore, we have extended this model to account for monovalent salt effects on elastic moduli during the transition. We find that this theoretical description is in very good agreement with recent measurements for the salt dependence of the overstretching transition, allowing us to gain insight into the mechanisms that govern the transition. In double-stranded DNA, the effective length per unit charge varies with salt in agreement with the Manning and Poisson-Boltzmann models for thin polyelectrolyte rods, whereas the other model parameters describing structural features have barely any salt dependence. The results thus suggest that the electrostatic component of force-induced overstretching is mediated mesoscopically via elasticity.

Citing Articles

Cisplatin fastens chromatin irreversibly even at a high chloride concentration.

Moon H, Park J, Lee I, Kang Y, Jung H, An D Nucleic Acids Res. 2021; 49(21):12035-12047.

PMID: 34865121 PMC: 8643659. DOI: 10.1093/nar/gkab922.


BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.

Rao A, Grainger D Biomater Sci. 2014; 2(4):436-471.

PMID: 24765522 PMC: 3992954. DOI: 10.1039/C3BM60181A.


Helix-coil transition in terms of Potts-like spins.

Badasyan A, Giacometti A, Podgornik R, Mamasakhlisov Y, Morozov V Eur Phys J E Soft Matter. 2013; 36(5):46.

PMID: 23665762 DOI: 10.1140/epje/i2013-13046-7.


Effects of magnesium salt concentrations on B-DNA overstretching transition.

Fu H, Chen H, Koh C, Lim C Eur Phys J E Soft Matter. 2009; 29(1):45-9.

PMID: 19408021 DOI: 10.1140/epje/i2009-10448-0.

References
1.
Allemand J, Bensimon D, Croquette V . Stretching DNA and RNA to probe their interactions with proteins. Curr Opin Struct Biol. 2003; 13(3):266-74. DOI: 10.1016/s0959-440x(03)00067-8. View

2.
Williams M, Wenner J, Rouzina I, Bloomfield V . Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting. Biophys J. 2001; 80(2):874-81. PMC: 1301285. DOI: 10.1016/S0006-3495(01)76066-3. View

3.
Le Bret M, ZIMM B . Monte Carlo determination of the distribution of ions about a cylindrical polyelectrolyte. Biopolymers. 1984; 23(2):271-85. DOI: 10.1002/bip.360230208. View

4.
Smith S, Cui Y, Bustamante C . Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science. 1996; 271(5250):795-9. DOI: 10.1126/science.271.5250.795. View

5.
Ahsan A, Rudnick J, Bruinsma R . Elasticity theory of the B-DNA to S-DNA transition. Biophys J. 1998; 74(1):132-7. PMC: 1299369. DOI: 10.1016/S0006-3495(98)77774-4. View